Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 AC008040.2-201ENST00000461049 708 ntBASIC13.85□□□□□ -0.19
LINC00477Q96M19 B3GAT3P1-201ENST00000471720 806 ntBASIC13.85□□□□□ -0.19
LINC00477Q96M19 AC011506.1-201ENST00000474329 610 ntBASIC13.85□□□□□ -0.19
LINC00477Q96M19 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC13.85□□□□□ -0.19
LINC00477Q96M19 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC13.85□□□□□ -0.19
LINC00477Q96M19 RPPH1-201ENST00000516869 333 ntBASIC13.85□□□□□ -0.19
LINC00477Q96M19 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
LINC00477Q96M19 RNF121-214ENST00000533380 870 ntTSL 3 BASIC13.85□□□□□ -0.19
LINC00477Q96M19 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC13.85□□□□□ -0.19
LINC00477Q96M19 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC13.85□□□□□ -0.19
LINC00477Q96M19 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC13.85□□□□□ -0.19
LINC00477Q96M19 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC13.85□□□□□ -0.19
LINC00477Q96M19 AP000692.2-201ENST00000608391 879 ntBASIC13.85□□□□□ -0.19
LINC00477Q96M19 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
LINC00477Q96M19 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC13.85□□□□□ -0.19
LINC00477Q96M19 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC13.85□□□□□ -0.19
LINC00477Q96M19 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC13.85□□□□□ -0.19
LINC00477Q96M19 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 AC135776.1-201ENST00000319817 2481 ntBASIC13.85□□□□□ -0.19
LINC00477Q96M19 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC13.85□□□□□ -0.19
LINC00477Q96M19 AC008556.1-201ENST00000610908 2040 ntBASIC13.85□□□□□ -0.19
LINC00477Q96M19 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LINC00477Q96M19 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00477Q96M19 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00477Q96M19 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00477Q96M19 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00477Q96M19 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00477Q96M19 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00477Q96M19 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00477Q96M19 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 MIR564-202ENST00000385049 94 ntBASIC13.84□□□□□ -0.19
LINC00477Q96M19 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00477Q96M19 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00477Q96M19 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00477Q96M19 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00477Q96M19 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00477Q96M19 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
LINC00477Q96M19 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
LINC00477Q96M19 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC13.83□□□□□ -0.19
LINC00477Q96M19 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.19
LINC00477Q96M19 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
LINC00477Q96M19 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
LINC00477Q96M19 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
LINC00477Q96M19 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC13.83□□□□□ -0.2
LINC00477Q96M19 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
LINC00477Q96M19 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC13.83□□□□□ -0.2
LINC00477Q96M19 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LINC00477Q96M19 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
LINC00477Q96M19 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
LINC00477Q96M19 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
LINC00477Q96M19 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
LINC00477Q96M19 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC13.83□□□□□ -0.2
LINC00477Q96M19 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC13.83□□□□□ -0.2
LINC00477Q96M19 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
LINC00477Q96M19 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC13.83□□□□□ -0.2
LINC00477Q96M19 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC13.83□□□□□ -0.2
LINC00477Q96M19 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
LINC00477Q96M19 MMD2-204ENST00000612910 778 ntTSL 5 BASIC13.83□□□□□ -0.2
LINC00477Q96M19 FAM197Y4-202ENST00000622692 608 ntBASIC13.83□□□□□ -0.2
LINC00477Q96M19 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LINC00477Q96M19 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC13.83□□□□□ -0.2
LINC00477Q96M19 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
LINC00477Q96M19 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC13.83□□□□□ -0.2
LINC00477Q96M19 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
LINC00477Q96M19 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
LINC00477Q96M19 AL133373.2-201ENST00000623187 2828 ntBASIC13.83□□□□□ -0.2
LINC00477Q96M19 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LINC00477Q96M19 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC13.83□□□□□ -0.2
LINC00477Q96M19 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms