Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLCN3P51790 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLCN3P51790 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLCN3P51790 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLCN3P51790 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLCN3P51790 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLCN3P51790 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC20.24■□□□□ 0.83
CLCN3P51790 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.24■□□□□ 0.83
CLCN3P51790 PP7080-204ENST00000510714 601 ntTSL 3 BASIC20.24■□□□□ 0.83
CLCN3P51790 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.24■□□□□ 0.83
CLCN3P51790 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC20.24■□□□□ 0.83
CLCN3P51790 AC090616.6-201ENST00000582640 721 ntBASIC20.24■□□□□ 0.83
CLCN3P51790 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CLCN3P51790 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC20.24■□□□□ 0.83
CLCN3P51790 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.24■□□□□ 0.83
CLCN3P51790 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CLCN3P51790 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.24■□□□□ 0.83
CLCN3P51790 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLCN3P51790 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLCN3P51790 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CLCN3P51790 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
CLCN3P51790 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLCN3P51790 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLCN3P51790 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CLCN3P51790 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLCN3P51790 KRT89P-201ENST00000620027 1478 ntBASIC20.24■□□□□ 0.83
CLCN3P51790 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLCN3P51790 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLCN3P51790 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.23■□□□□ 0.83
CLCN3P51790 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CLCN3P51790 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLCN3P51790 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC20.23■□□□□ 0.83
CLCN3P51790 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLCN3P51790 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLCN3P51790 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLCN3P51790 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLCN3P51790 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLCN3P51790 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CLCN3P51790 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLCN3P51790 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLCN3P51790 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.23■□□□□ 0.83
CLCN3P51790 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC20.23■□□□□ 0.83
CLCN3P51790 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CLCN3P51790 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC20.23■□□□□ 0.83
CLCN3P51790 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CLCN3P51790 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC20.23■□□□□ 0.83
CLCN3P51790 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC20.23■□□□□ 0.83
CLCN3P51790 AL592071.1-201ENST00000611956 408 ntBASIC20.23■□□□□ 0.83
CLCN3P51790 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.23■□□□□ 0.83
CLCN3P51790 AC004263.2-201ENST00000617183 678 ntBASIC20.23■□□□□ 0.83
CLCN3P51790 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CLCN3P51790 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.23■□□□□ 0.83
CLCN3P51790 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLCN3P51790 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLCN3P51790 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.22■□□□□ 0.83
CLCN3P51790 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLCN3P51790 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLCN3P51790 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.22■□□□□ 0.83
CLCN3P51790 ANO7L1-203ENST00000602586 1720 ntBASIC20.22■□□□□ 0.83
CLCN3P51790 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CLCN3P51790 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLCN3P51790 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLCN3P51790 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLCN3P51790 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.22■□□□□ 0.83
CLCN3P51790 PNN-202ENST00000553331 656 ntTSL 3 BASIC20.22■□□□□ 0.83
CLCN3P51790 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC20.22■□□□□ 0.83
CLCN3P51790 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLCN3P51790 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC20.22■□□□□ 0.83
CLCN3P51790 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CLCN3P51790 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CLCN3P51790 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.22■□□□□ 0.83
CLCN3P51790 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CLCN3P51790 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLCN3P51790 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLCN3P51790 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLCN3P51790 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLCN3P51790 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLCN3P51790 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLCN3P51790 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.21■□□□□ 0.83
CLCN3P51790 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC20.21■□□□□ 0.83
CLCN3P51790 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CLCN3P51790 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLCN3P51790 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CLCN3P51790 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLCN3P51790 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLCN3P51790 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CLCN3P51790 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.21■□□□□ 0.83
CLCN3P51790 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC20.21■□□□□ 0.83
CLCN3P51790 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.21■□□□□ 0.83
CLCN3P51790 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
CLCN3P51790 AC124864.1-201ENST00000623408 392 ntBASIC20.21■□□□□ 0.83
CLCN3P51790 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLCN3P51790 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLCN3P51790 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CLCN3P51790 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLCN3P51790 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLCN3P51790 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.21■□□□□ 0.83
CLCN3P51790 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC20.21■□□□□ 0.83
CLCN3P51790 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLCN3P51790 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 9.5 ms