Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AL035633.1-201ENST00000406139 838 ntBASIC16.08■□□□□ 0.16
COL8A1P27658 AC023274.1-201ENST00000418278 595 ntBASIC16.08■□□□□ 0.16
COL8A1P27658 RPS2P1-201ENST00000434010 821 ntBASIC16.08■□□□□ 0.16
COL8A1P27658 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.08■□□□□ 0.16
COL8A1P27658 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL8A1P27658 AC040169.1-201ENST00000565382 521 ntBASIC16.08■□□□□ 0.16
COL8A1P27658 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.08■□□□□ 0.16
COL8A1P27658 AC024563.2-201ENST00000603282 481 ntBASIC16.08■□□□□ 0.16
COL8A1P27658 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL8A1P27658 AC114341.1-201ENST00000618070 349 ntBASIC16.08■□□□□ 0.16
COL8A1P27658 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.08■□□□□ 0.16
COL8A1P27658 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
COL8A1P27658 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
COL8A1P27658 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL8A1P27658 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL8A1P27658 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
COL8A1P27658 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL8A1P27658 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC16.08■□□□□ 0.16
COL8A1P27658 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL8A1P27658 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL8A1P27658 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL8A1P27658 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL8A1P27658 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL8A1P27658 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
COL8A1P27658 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC16.08■□□□□ 0.16
COL8A1P27658 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL8A1P27658 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL8A1P27658 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL8A1P27658 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL8A1P27658 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL8A1P27658 HCG11-201ENST00000411553 5696 ntBASIC16.07■□□□□ 0.16
COL8A1P27658 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
COL8A1P27658 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL8A1P27658 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.07■□□□□ 0.16
COL8A1P27658 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.07■□□□□ 0.16
COL8A1P27658 RCN1P2-201ENST00000398357 915 ntBASIC16.07■□□□□ 0.16
COL8A1P27658 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC16.07■□□□□ 0.16
COL8A1P27658 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.07■□□□□ 0.16
COL8A1P27658 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.07■□□□□ 0.16
COL8A1P27658 AC007967.2-201ENST00000432613 625 ntBASIC16.07■□□□□ 0.16
COL8A1P27658 RNA5SP415-201ENST00000517246 115 ntBASIC16.07■□□□□ 0.16
COL8A1P27658 RFPL4AP1-201ENST00000530883 850 ntBASIC16.07■□□□□ 0.16
COL8A1P27658 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.07■□□□□ 0.16
COL8A1P27658 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.07■□□□□ 0.16
COL8A1P27658 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.07■□□□□ 0.16
COL8A1P27658 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.07■□□□□ 0.16
COL8A1P27658 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.07■□□□□ 0.16
COL8A1P27658 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.07■□□□□ 0.16
COL8A1P27658 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL8A1P27658 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.07■□□□□ 0.16
COL8A1P27658 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
COL8A1P27658 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC16.07■□□□□ 0.16
COL8A1P27658 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL8A1P27658 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL8A1P27658 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC16.07■□□□□ 0.16
COL8A1P27658 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL8A1P27658 AC008556.1-201ENST00000610908 2040 ntBASIC16.07■□□□□ 0.16
COL8A1P27658 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL8A1P27658 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC16.07■□□□□ 0.16
COL8A1P27658 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
COL8A1P27658 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL8A1P27658 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL8A1P27658 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL8A1P27658 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL8A1P27658 SDHAP1-207ENST00000440850 2000 ntBASIC16.06■□□□□ 0.16
COL8A1P27658 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
COL8A1P27658 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL8A1P27658 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL8A1P27658 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.06■□□□□ 0.16
COL8A1P27658 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL8A1P27658 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL8A1P27658 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.06■□□□□ 0.16
COL8A1P27658 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL8A1P27658 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL8A1P27658 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL8A1P27658 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL8A1P27658 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
COL8A1P27658 AC211486.1-202ENST00000416371 468 ntBASIC16.06■□□□□ 0.16
COL8A1P27658 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC16.06■□□□□ 0.16
COL8A1P27658 AC211476.1-201ENST00000503899 468 ntBASIC16.06■□□□□ 0.16
COL8A1P27658 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC16.06■□□□□ 0.16
COL8A1P27658 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.06■□□□□ 0.16
COL8A1P27658 AC012640.2-201ENST00000561606 901 ntBASIC16.06■□□□□ 0.16
COL8A1P27658 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
COL8A1P27658 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.06■□□□□ 0.16
COL8A1P27658 Z83851.2-201ENST00000609564 659 ntBASIC16.06■□□□□ 0.16
COL8A1P27658 AP001269.4-201ENST00000609611 512 ntBASIC16.06■□□□□ 0.16
COL8A1P27658 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
COL8A1P27658 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC16.06■□□□□ 0.16
COL8A1P27658 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL8A1P27658 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL8A1P27658 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL8A1P27658 AL691432.2-201ENST00000607222 2038 ntBASIC16.06■□□□□ 0.16
COL8A1P27658 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC16.06■□□□□ 0.16
COL8A1P27658 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC16.06■□□□□ 0.16
COL8A1P27658 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL8A1P27658 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL8A1P27658 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL8A1P27658 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL8A1P27658 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms