Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 MINOS1P3-201ENST00000457048 203 ntBASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 KRT18P58-201ENST00000527480 1120 ntBASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 ABR-217ENST00000572441 563 ntTSL 4 BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 AP005901.3-202ENST00000581653 237 ntBASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMD1Q9UGP4 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMD1Q9UGP4 TCF3P1-201ENST00000423021 1937 ntBASIC19.22■□□□□ 0.67
LIMD1Q9UGP4 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.22■□□□□ 0.67
LIMD1Q9UGP4 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMD1Q9UGP4 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMD1Q9UGP4 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMD1Q9UGP4 AL031284.1-201ENST00000419297 478 ntBASIC19.22■□□□□ 0.67
LIMD1Q9UGP4 AC091607.1-201ENST00000490318 1060 ntBASIC19.22■□□□□ 0.67
LIMD1Q9UGP4 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC19.22■□□□□ 0.67
LIMD1Q9UGP4 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC19.22■□□□□ 0.67
LIMD1Q9UGP4 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
LIMD1Q9UGP4 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMD1Q9UGP4 AL512353.2-201ENST00000448759 1962 ntBASIC19.22■□□□□ 0.67
LIMD1Q9UGP4 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMD1Q9UGP4 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.22■□□□□ 0.67
LIMD1Q9UGP4 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMD1Q9UGP4 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
LIMD1Q9UGP4 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMD1Q9UGP4 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMD1Q9UGP4 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.22■□□□□ 0.67
LIMD1Q9UGP4 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 MIR1233-2-201ENST00000408138 82 ntBASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 MIR1233-1-201ENST00000408722 82 ntBASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 POLD2P1-201ENST00000511220 997 ntBASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMD1Q9UGP4 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.66
LIMD1Q9UGP4 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms