Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC23.42■■□□□ 1.34
USP42Q9H9J4 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC23.42■■□□□ 1.34
USP42Q9H9J4 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC23.42■■□□□ 1.34
USP42Q9H9J4 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
USP42Q9H9J4 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
USP42Q9H9J4 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
USP42Q9H9J4 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC23.42■■□□□ 1.34
USP42Q9H9J4 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC23.42■■□□□ 1.34
USP42Q9H9J4 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
USP42Q9H9J4 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
USP42Q9H9J4 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
USP42Q9H9J4 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
USP42Q9H9J4 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
USP42Q9H9J4 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC23.41■■□□□ 1.34
USP42Q9H9J4 AL031284.1-201ENST00000419297 478 ntBASIC23.41■■□□□ 1.34
USP42Q9H9J4 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC23.41■■□□□ 1.34
USP42Q9H9J4 MINOS1P3-201ENST00000457048 203 ntBASIC23.41■■□□□ 1.34
USP42Q9H9J4 AC148477.8-201ENST00000624298 468 ntBASIC23.41■■□□□ 1.34
USP42Q9H9J4 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC23.41■■□□□ 1.34
USP42Q9H9J4 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
USP42Q9H9J4 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
USP42Q9H9J4 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
USP42Q9H9J4 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
USP42Q9H9J4 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC23.41■■□□□ 1.34
USP42Q9H9J4 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC23.41■■□□□ 1.34
USP42Q9H9J4 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC23.41■■□□□ 1.34
USP42Q9H9J4 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
USP42Q9H9J4 FP475955.4-201ENST00000623131 1990 ntBASIC23.41■■□□□ 1.34
USP42Q9H9J4 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
USP42Q9H9J4 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
USP42Q9H9J4 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
USP42Q9H9J4 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USP42Q9H9J4 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC23.4■■□□□ 1.34
USP42Q9H9J4 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC23.4■■□□□ 1.34
USP42Q9H9J4 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USP42Q9H9J4 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
USP42Q9H9J4 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC23.4■■□□□ 1.34
USP42Q9H9J4 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
USP42Q9H9J4 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC23.4■■□□□ 1.34
USP42Q9H9J4 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC23.4■■□□□ 1.34
USP42Q9H9J4 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC23.4■■□□□ 1.34
USP42Q9H9J4 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC23.4■■□□□ 1.34
USP42Q9H9J4 ABBA01031661.1-201ENST00000634362 1253 ntBASIC23.4■■□□□ 1.34
USP42Q9H9J4 UBQLN4P1-201ENST00000461599 1801 ntBASIC23.4■■□□□ 1.34
USP42Q9H9J4 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC23.4■■□□□ 1.34
USP42Q9H9J4 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC23.4■■□□□ 1.34
USP42Q9H9J4 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
USP42Q9H9J4 FEM1AP3-201ENST00000403722 1741 ntBASIC23.4■■□□□ 1.34
USP42Q9H9J4 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC23.4■■□□□ 1.34
USP42Q9H9J4 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC23.4■■□□□ 1.34
USP42Q9H9J4 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USP42Q9H9J4 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USP42Q9H9J4 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USP42Q9H9J4 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC23.4■■□□□ 1.34
USP42Q9H9J4 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
USP42Q9H9J4 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USP42Q9H9J4 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
USP42Q9H9J4 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
USP42Q9H9J4 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
USP42Q9H9J4 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC23.39■■□□□ 1.34
USP42Q9H9J4 MED22-202ENST00000371999 987 ntTSL 3 BASIC23.39■■□□□ 1.34
USP42Q9H9J4 POM121L3P-201ENST00000419331 1163 ntBASIC23.39■■□□□ 1.34
USP42Q9H9J4 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC23.39■■□□□ 1.34
USP42Q9H9J4 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC23.39■■□□□ 1.34
USP42Q9H9J4 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC23.39■■□□□ 1.34
USP42Q9H9J4 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC23.39■■□□□ 1.34
USP42Q9H9J4 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.34
USP42Q9H9J4 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
USP42Q9H9J4 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC23.39■■□□□ 1.34
USP42Q9H9J4 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
USP42Q9H9J4 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
USP42Q9H9J4 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.33
USP42Q9H9J4 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
USP42Q9H9J4 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC23.39■■□□□ 1.33
USP42Q9H9J4 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC23.39■■□□□ 1.33
USP42Q9H9J4 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP42Q9H9J4 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
USP42Q9H9J4 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
USP42Q9H9J4 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC23.38■■□□□ 1.33
USP42Q9H9J4 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
USP42Q9H9J4 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC23.38■■□□□ 1.33
USP42Q9H9J4 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC23.38■■□□□ 1.33
USP42Q9H9J4 AC011840.4-201ENST00000578471 627 ntBASIC23.38■■□□□ 1.33
USP42Q9H9J4 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
USP42Q9H9J4 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP42Q9H9J4 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC23.38■■□□□ 1.33
USP42Q9H9J4 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP42Q9H9J4 PKD1P6-201ENST00000343738 4769 ntBASIC23.38■■□□□ 1.33
USP42Q9H9J4 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC23.38■■□□□ 1.33
USP42Q9H9J4 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP42Q9H9J4 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC23.38■■□□□ 1.33
USP42Q9H9J4 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP42Q9H9J4 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP42Q9H9J4 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC23.38■■□□□ 1.33
USP42Q9H9J4 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
USP42Q9H9J4 AC243591.1-201ENST00000452967 1364 ntBASIC23.38■■□□□ 1.33
USP42Q9H9J4 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
USP42Q9H9J4 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
USP42Q9H9J4 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
USP42Q9H9J4 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms