Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 AL355355.2-201ENST00000442321 338 ntBASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 AC138028.4-201ENST00000564984 1845 ntBASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HERPUD2Q9BSE4 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 AL023803.3-201ENST00000615559 522 ntBASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 AC073912.3-201ENST00000624414 853 ntBASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 SDHAP2-201ENST00000455183 2001 ntBASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HERPUD2Q9BSE4 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
HERPUD2Q9BSE4 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.14■□□□□ 0.66
HERPUD2Q9BSE4 AC034236.2-201ENST00000606662 1610 ntBASIC19.14■□□□□ 0.66
HERPUD2Q9BSE4 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
HERPUD2Q9BSE4 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
HERPUD2Q9BSE4 PHGDH-209ENST00000641074 1780 ntBASIC19.14■□□□□ 0.66
HERPUD2Q9BSE4 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HERPUD2Q9BSE4 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
HERPUD2Q9BSE4 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC19.14■□□□□ 0.65
HERPUD2Q9BSE4 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HERPUD2Q9BSE4 CA15P1-201ENST00000481698 905 ntBASIC19.14■□□□□ 0.65
HERPUD2Q9BSE4 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HERPUD2Q9BSE4 AP003071.4-201ENST00000562276 1284 ntBASIC19.14■□□□□ 0.65
HERPUD2Q9BSE4 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.14■□□□□ 0.65
HERPUD2Q9BSE4 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.14■□□□□ 0.65
HERPUD2Q9BSE4 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.14■□□□□ 0.65
HERPUD2Q9BSE4 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
HERPUD2Q9BSE4 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC19.14■□□□□ 0.65
HERPUD2Q9BSE4 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
HERPUD2Q9BSE4 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HERPUD2Q9BSE4 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.14■□□□□ 0.65
HERPUD2Q9BSE4 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.14■□□□□ 0.65
HERPUD2Q9BSE4 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.14■□□□□ 0.65
HERPUD2Q9BSE4 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC19.14■□□□□ 0.65
HERPUD2Q9BSE4 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HERPUD2Q9BSE4 AC020763.4-201ENST00000623414 4170 ntBASIC19.14■□□□□ 0.65
HERPUD2Q9BSE4 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.14■□□□□ 0.65
HERPUD2Q9BSE4 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HERPUD2Q9BSE4 AL096828.2-201ENST00000567259 1965 ntBASIC19.13■□□□□ 0.65
HERPUD2Q9BSE4 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HERPUD2Q9BSE4 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HERPUD2Q9BSE4 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC19.13■□□□□ 0.65
HERPUD2Q9BSE4 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HERPUD2Q9BSE4 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.13■□□□□ 0.65
HERPUD2Q9BSE4 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
HERPUD2Q9BSE4 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HERPUD2Q9BSE4 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.13■□□□□ 0.65
HERPUD2Q9BSE4 RBM17P1-201ENST00000453646 1190 ntBASIC19.13■□□□□ 0.65
HERPUD2Q9BSE4 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HERPUD2Q9BSE4 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.13■□□□□ 0.65
HERPUD2Q9BSE4 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
HERPUD2Q9BSE4 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.13■□□□□ 0.65
HERPUD2Q9BSE4 MIR3180-5-201ENST00000583743 153 ntBASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms