Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC135776.1-201ENST00000319817 2481 ntBASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 GGT1-206ENST00000404223 952 ntTSL 2 BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 POM121L13P-201ENST00000422362 380 ntBASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 RN7SL471P-201ENST00000580476 299 ntBASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 AL359736.2-201ENST00000621992 437 ntBASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.12■□□□□ 0.33
ZNF540Q8NDQ6 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 AC008550.1-201ENST00000511500 884 ntBASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 C1QBPP2-201ENST00000528754 825 ntBASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNF540Q8NDQ6 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms