Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC18.97■□□□□ 0.63
COL9A1P20849 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.97■□□□□ 0.63
COL9A1P20849 AC069262.1-201ENST00000539058 672 ntBASIC18.97■□□□□ 0.63
COL9A1P20849 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.97■□□□□ 0.63
COL9A1P20849 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.97■□□□□ 0.63
COL9A1P20849 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL9A1P20849 AC124864.1-201ENST00000623408 392 ntBASIC18.97■□□□□ 0.63
COL9A1P20849 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.97■□□□□ 0.63
COL9A1P20849 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.97■□□□□ 0.63
COL9A1P20849 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL9A1P20849 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL9A1P20849 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL9A1P20849 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL9A1P20849 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL9A1P20849 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL9A1P20849 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL9A1P20849 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
COL9A1P20849 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
COL9A1P20849 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
COL9A1P20849 PKD1P6-201ENST00000343738 4769 ntBASIC18.96■□□□□ 0.63
COL9A1P20849 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL9A1P20849 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL9A1P20849 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL9A1P20849 TEX21P-204ENST00000641479 1693 ntBASIC18.96■□□□□ 0.63
COL9A1P20849 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL9A1P20849 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL9A1P20849 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL9A1P20849 OR8S1-201ENST00000310194 1080 ntBASIC18.96■□□□□ 0.63
COL9A1P20849 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.96■□□□□ 0.63
COL9A1P20849 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
COL9A1P20849 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
COL9A1P20849 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.96■□□□□ 0.63
COL9A1P20849 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC18.96■□□□□ 0.63
COL9A1P20849 AC132008.2-207ENST00000454517 770 ntBASIC18.96■□□□□ 0.63
COL9A1P20849 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC18.96■□□□□ 0.63
COL9A1P20849 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.96■□□□□ 0.63
COL9A1P20849 AP005901.3-202ENST00000581653 237 ntBASIC18.96■□□□□ 0.63
COL9A1P20849 INO80C-206ENST00000586489 594 ntTSL 3 BASIC18.96■□□□□ 0.63
COL9A1P20849 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.96■□□□□ 0.63
COL9A1P20849 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.96■□□□□ 0.63
COL9A1P20849 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.96■□□□□ 0.63
COL9A1P20849 AC093028.1-201ENST00000622998 982 ntBASIC18.96■□□□□ 0.63
COL9A1P20849 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC18.96■□□□□ 0.63
COL9A1P20849 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL9A1P20849 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
COL9A1P20849 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL9A1P20849 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.96■□□□□ 0.63
COL9A1P20849 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.96■□□□□ 0.63
COL9A1P20849 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL9A1P20849 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
COL9A1P20849 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.95■□□□□ 0.62
COL9A1P20849 AC125437.2-201ENST00000625180 2167 ntBASIC18.95■□□□□ 0.62
COL9A1P20849 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.95■□□□□ 0.62
COL9A1P20849 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL9A1P20849 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL9A1P20849 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL9A1P20849 SLC25A6P5-201ENST00000435663 894 ntBASIC18.95■□□□□ 0.62
COL9A1P20849 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.95■□□□□ 0.62
COL9A1P20849 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.95■□□□□ 0.62
COL9A1P20849 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL9A1P20849 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.95■□□□□ 0.62
COL9A1P20849 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL9A1P20849 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC18.95■□□□□ 0.62
COL9A1P20849 AP001269.4-201ENST00000609611 512 ntBASIC18.95■□□□□ 0.62
COL9A1P20849 AL592071.1-201ENST00000611956 408 ntBASIC18.95■□□□□ 0.62
COL9A1P20849 AC093512.1-201ENST00000617969 520 ntBASIC18.95■□□□□ 0.62
COL9A1P20849 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.95■□□□□ 0.62
COL9A1P20849 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL9A1P20849 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL9A1P20849 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
COL9A1P20849 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL9A1P20849 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.95■□□□□ 0.62
COL9A1P20849 CLDN5-201ENST00000403084 2357 ntBASIC18.95■□□□□ 0.62
COL9A1P20849 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL9A1P20849 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL9A1P20849 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.94■□□□□ 0.62
COL9A1P20849 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
COL9A1P20849 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.94■□□□□ 0.62
COL9A1P20849 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.94■□□□□ 0.62
COL9A1P20849 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
COL9A1P20849 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL9A1P20849 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL9A1P20849 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL9A1P20849 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.94■□□□□ 0.62
COL9A1P20849 HLA-J-201ENST00000462773 1622 ntBASIC18.94■□□□□ 0.62
COL9A1P20849 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.94■□□□□ 0.62
COL9A1P20849 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL9A1P20849 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
COL9A1P20849 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL9A1P20849 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL9A1P20849 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC18.94■□□□□ 0.62
COL9A1P20849 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.94■□□□□ 0.62
COL9A1P20849 PRSS29P-201ENST00000440800 595 ntBASIC18.94■□□□□ 0.62
COL9A1P20849 SIGLEC30P-201ENST00000455569 941 ntBASIC18.94■□□□□ 0.62
COL9A1P20849 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.94■□□□□ 0.62
COL9A1P20849 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL9A1P20849 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL9A1P20849 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.94■□□□□ 0.62
COL9A1P20849 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.94■□□□□ 0.62
COL9A1P20849 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms