Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC15.05■□□□□ 0
TRAV40A0A0B4J280 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC15.05■□□□□ 0
TRAV40A0A0B4J280 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
TRAV40A0A0B4J280 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 MIR662-201ENST00000384847 95 ntBASIC15.05■□□□□ -0
TRAV40A0A0B4J280 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 PVRIG2P-201ENST00000435460 978 ntBASIC15.05■□□□□ -0
TRAV40A0A0B4J280 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 KRT8P26-201ENST00000534154 1276 ntBASIC15.05■□□□□ -0
TRAV40A0A0B4J280 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 AC092329.2-201ENST00000598402 547 ntBASIC15.05■□□□□ -0
TRAV40A0A0B4J280 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 MTMR9LP-203ENST00000426597 1545 ntBASIC15.05■□□□□ -0
TRAV40A0A0B4J280 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
TRAV40A0A0B4J280 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 AC116562.4-201ENST00000641316 2276 ntBASIC15.04■□□□□ -0
TRAV40A0A0B4J280 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 AC005332.7-201ENST00000614046 2005 ntBASIC15.04■□□□□ -0
TRAV40A0A0B4J280 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 AC016734.2-201ENST00000624325 1377 ntBASIC15.04■□□□□ -0
TRAV40A0A0B4J280 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 TSPY22P-201ENST00000427496 604 ntBASIC15.04■□□□□ -0
TRAV40A0A0B4J280 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 PP7080-204ENST00000510714 601 ntTSL 3 BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 PRELID1P1-202ENST00000567272 903 ntBASIC15.04■□□□□ -0
TRAV40A0A0B4J280 MIR3180-4-201ENST00000582223 153 ntBASIC15.04■□□□□ -0
TRAV40A0A0B4J280 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC15.04■□□□□ -0
TRAV40A0A0B4J280 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 Z83836.1-201ENST00000624605 1642 ntBASIC15.03■□□□□ -0
TRAV40A0A0B4J280 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 UBC-206ENST00000538617 1303 ntTSL 5 BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 AL450487.1-201ENST00000426799 995 ntBASIC15.03■□□□□ -0
TRAV40A0A0B4J280 CHCHD2P8-201ENST00000429873 447 ntBASIC15.03■□□□□ -0
TRAV40A0A0B4J280 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC15.03■□□□□ -0
TRAV40A0A0B4J280 AP003733.1-201ENST00000491725 852 ntBASIC15.03■□□□□ -0
TRAV40A0A0B4J280 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms