Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HTTP42858 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
HTTP42858 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HTTP42858 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
HTTP42858 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
HTTP42858 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HTTP42858 KRT18P27-201ENST00000427733 1299 ntBASIC20.76■□□□□ 0.91
HTTP42858 DDT-206ENST00000430101 573 ntTSL 2 BASIC20.76■□□□□ 0.91
HTTP42858 CRCP-205ENST00000431089 942 ntTSL 2 BASIC20.76■□□□□ 0.91
HTTP42858 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC20.76■□□□□ 0.91
HTTP42858 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC20.76■□□□□ 0.91
HTTP42858 AC027612.4-201ENST00000605371 583 ntBASIC20.76■□□□□ 0.91
HTTP42858 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC20.76■□□□□ 0.91
HTTP42858 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC20.76■□□□□ 0.91
HTTP42858 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
HTTP42858 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
HTTP42858 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
HTTP42858 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC20.76■□□□□ 0.91
HTTP42858 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.76■□□□□ 0.91
HTTP42858 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC20.76■□□□□ 0.91
HTTP42858 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
HTTP42858 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
HTTP42858 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HTTP42858 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
HTTP42858 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HTTP42858 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HTTP42858 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HTTP42858 AC009947.1-201ENST00000444350 727 ntBASIC20.75■□□□□ 0.91
HTTP42858 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC20.75■□□□□ 0.91
HTTP42858 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC20.75■□□□□ 0.91
HTTP42858 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
HTTP42858 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HTTP42858 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
HTTP42858 AC004817.3-201ENST00000602957 2129 ntBASIC20.75■□□□□ 0.91
HTTP42858 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
HTTP42858 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HTTP42858 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC20.75■□□□□ 0.91
HTTP42858 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC20.75■□□□□ 0.91
HTTP42858 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
HTTP42858 AL357033.4-201ENST00000617703 1807 ntBASIC20.75■□□□□ 0.91
HTTP42858 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.74■□□□□ 0.91
HTTP42858 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
HTTP42858 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HTTP42858 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HTTP42858 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
HTTP42858 AL645939.2-201ENST00000427340 991 ntBASIC20.74■□□□□ 0.91
HTTP42858 BCRP1-201ENST00000444246 691 ntBASIC20.74■□□□□ 0.91
HTTP42858 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC20.74■□□□□ 0.91
HTTP42858 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC20.74■□□□□ 0.91
HTTP42858 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
HTTP42858 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HTTP42858 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
HTTP42858 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC20.74■□□□□ 0.91
HTTP42858 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HTTP42858 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HTTP42858 RNA5SP416-201ENST00000516838 111 ntBASIC20.74■□□□□ 0.91
HTTP42858 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HTTP42858 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
HTTP42858 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HTTP42858 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.74■□□□□ 0.91
HTTP42858 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HTTP42858 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HTTP42858 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.73■□□□□ 0.91
HTTP42858 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC20.73■□□□□ 0.91
HTTP42858 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
HTTP42858 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HTTP42858 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HTTP42858 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HTTP42858 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
HTTP42858 Z82202.1-201ENST00000623446 1880 ntBASIC20.73■□□□□ 0.91
HTTP42858 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HTTP42858 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
HTTP42858 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC20.73■□□□□ 0.91
HTTP42858 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HTTP42858 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC20.73■□□□□ 0.91
HTTP42858 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HTTP42858 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HTTP42858 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HTTP42858 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC20.73■□□□□ 0.91
HTTP42858 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC20.73■□□□□ 0.91
HTTP42858 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
HTTP42858 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC20.73■□□□□ 0.91
HTTP42858 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.73■□□□□ 0.91
HTTP42858 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
HTTP42858 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
HTTP42858 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
HTTP42858 AC244107.1-201ENST00000442033 332 ntBASIC20.73■□□□□ 0.91
HTTP42858 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC20.73■□□□□ 0.91
HTTP42858 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC20.73■□□□□ 0.91
HTTP42858 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HTTP42858 NARF-204ENST00000390006 1766 ntTSL 2 BASIC20.73■□□□□ 0.91
HTTP42858 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HTTP42858 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.72■□□□□ 0.91
HTTP42858 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC20.72■□□□□ 0.91
HTTP42858 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HTTP42858 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.72■□□□□ 0.91
HTTP42858 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.72■□□□□ 0.91
HTTP42858 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
HTTP42858 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HTTP42858 PNMT-202ENST00000394246 821 ntTSL 2 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms