Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL8A1P27658 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC16.14■□□□□ 0.17
COL8A1P27658 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC16.14■□□□□ 0.17
COL8A1P27658 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL8A1P27658 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
COL8A1P27658 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL8A1P27658 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL8A1P27658 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
COL8A1P27658 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
COL8A1P27658 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL8A1P27658 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL8A1P27658 AC104417.2-201ENST00000562989 1793 ntBASIC16.13■□□□□ 0.17
COL8A1P27658 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL8A1P27658 GOLGA2P11-201ENST00000562660 1621 ntBASIC16.13■□□□□ 0.17
COL8A1P27658 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
COL8A1P27658 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC16.13■□□□□ 0.17
COL8A1P27658 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
COL8A1P27658 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL8A1P27658 CALY-203ENST00000368558 825 ntTSL 5 BASIC16.13■□□□□ 0.17
COL8A1P27658 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.13■□□□□ 0.17
COL8A1P27658 METTL21AP1-201ENST00000438852 635 ntBASIC16.13■□□□□ 0.17
COL8A1P27658 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.13■□□□□ 0.17
COL8A1P27658 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
COL8A1P27658 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL8A1P27658 MTDHP3-201ENST00000594186 672 ntBASIC16.13■□□□□ 0.17
COL8A1P27658 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL8A1P27658 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.13■□□□□ 0.17
COL8A1P27658 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC16.13■□□□□ 0.17
COL8A1P27658 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL8A1P27658 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL8A1P27658 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL8A1P27658 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.13■□□□□ 0.17
COL8A1P27658 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL8A1P27658 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL8A1P27658 AP005212.1-201ENST00000581547 1997 ntBASIC16.13■□□□□ 0.17
COL8A1P27658 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL8A1P27658 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL8A1P27658 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL8A1P27658 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL8A1P27658 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL8A1P27658 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL8A1P27658 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
COL8A1P27658 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
COL8A1P27658 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC16.12■□□□□ 0.17
COL8A1P27658 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
COL8A1P27658 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL8A1P27658 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
COL8A1P27658 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL8A1P27658 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL8A1P27658 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL8A1P27658 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL8A1P27658 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL8A1P27658 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.12■□□□□ 0.17
COL8A1P27658 FGFR3P6-201ENST00000457012 610 ntBASIC16.12■□□□□ 0.17
COL8A1P27658 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
COL8A1P27658 AC092910.1-201ENST00000482027 1129 ntBASIC16.12■□□□□ 0.17
COL8A1P27658 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL8A1P27658 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC16.12■□□□□ 0.17
COL8A1P27658 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.12■□□□□ 0.17
COL8A1P27658 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL8A1P27658 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.12■□□□□ 0.17
COL8A1P27658 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL8A1P27658 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC16.12■□□□□ 0.17
COL8A1P27658 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL8A1P27658 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
COL8A1P27658 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.12■□□□□ 0.17
COL8A1P27658 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL8A1P27658 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL8A1P27658 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC16.12■□□□□ 0.17
COL8A1P27658 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL8A1P27658 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL8A1P27658 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL8A1P27658 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL8A1P27658 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC16.11■□□□□ 0.17
COL8A1P27658 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL8A1P27658 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL8A1P27658 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.11■□□□□ 0.17
COL8A1P27658 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL8A1P27658 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL8A1P27658 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL8A1P27658 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL8A1P27658 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL8A1P27658 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL8A1P27658 RPS2P28-201ENST00000314255 741 ntBASIC16.11■□□□□ 0.17
COL8A1P27658 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.11■□□□□ 0.17
COL8A1P27658 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
COL8A1P27658 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL8A1P27658 DNAJB3-201ENST00000446806 729 ntBASIC16.11■□□□□ 0.17
COL8A1P27658 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
COL8A1P27658 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.11■□□□□ 0.17
COL8A1P27658 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC16.11■□□□□ 0.17
COL8A1P27658 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.11■□□□□ 0.17
COL8A1P27658 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.11■□□□□ 0.17
COL8A1P27658 AC104390.1-201ENST00000555663 520 ntBASIC16.11■□□□□ 0.17
COL8A1P27658 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.11■□□□□ 0.17
COL8A1P27658 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL8A1P27658 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL8A1P27658 AC092364.2-202ENST00000597012 1073 ntBASIC16.11■□□□□ 0.17
COL8A1P27658 AC239800.4-201ENST00000603712 296 ntBASIC16.11■□□□□ 0.17
COL8A1P27658 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms