Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 AC141586.3-201ENST00000562166 1838 ntBASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CSB-PGBD3P0DP91 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CSB-PGBD3P0DP91 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC24.47■■□□□ 1.51
CSB-PGBD3P0DP91 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
CSB-PGBD3P0DP91 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC24.47■■□□□ 1.51
CSB-PGBD3P0DP91 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CSB-PGBD3P0DP91 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.51
CSB-PGBD3P0DP91 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CSB-PGBD3P0DP91 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC24.47■■□□□ 1.51
CSB-PGBD3P0DP91 RNPS1P1-201ENST00000507437 918 ntBASIC24.47■■□□□ 1.51
CSB-PGBD3P0DP91 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC24.47■■□□□ 1.51
CSB-PGBD3P0DP91 AL049840.3-201ENST00000602669 611 ntBASIC24.47■■□□□ 1.51
CSB-PGBD3P0DP91 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC24.47■■□□□ 1.51
CSB-PGBD3P0DP91 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC24.47■■□□□ 1.51
CSB-PGBD3P0DP91 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CSB-PGBD3P0DP91 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
CSB-PGBD3P0DP91 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CSB-PGBD3P0DP91 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC24.47■■□□□ 1.51
CSB-PGBD3P0DP91 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CSB-PGBD3P0DP91 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 MIR1233-2-201ENST00000408138 82 ntBASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 MIR1233-1-201ENST00000408722 82 ntBASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 AC106730.1-201ENST00000566722 1090 ntBASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC24.46■■□□□ 1.51
CSB-PGBD3P0DP91 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC24.45■■□□□ 1.51
CSB-PGBD3P0DP91 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
CSB-PGBD3P0DP91 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC24.45■■□□□ 1.51
CSB-PGBD3P0DP91 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC24.45■■□□□ 1.51
CSB-PGBD3P0DP91 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC24.45■■□□□ 1.51
CSB-PGBD3P0DP91 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC24.45■■□□□ 1.51
CSB-PGBD3P0DP91 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CSB-PGBD3P0DP91 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC24.45■■□□□ 1.5
CSB-PGBD3P0DP91 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CSB-PGBD3P0DP91 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC24.45■■□□□ 1.5
CSB-PGBD3P0DP91 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC24.45■■□□□ 1.5
CSB-PGBD3P0DP91 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC24.45■■□□□ 1.5
CSB-PGBD3P0DP91 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC24.45■■□□□ 1.5
CSB-PGBD3P0DP91 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CSB-PGBD3P0DP91 TERC-201ENST00000602385 541 ntBASIC24.45■■□□□ 1.5
CSB-PGBD3P0DP91 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CSB-PGBD3P0DP91 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
CSB-PGBD3P0DP91 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
CSB-PGBD3P0DP91 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CSB-PGBD3P0DP91 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CSB-PGBD3P0DP91 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CSB-PGBD3P0DP91 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC24.44■■□□□ 1.5
CSB-PGBD3P0DP91 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
CSB-PGBD3P0DP91 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CSB-PGBD3P0DP91 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
CSB-PGBD3P0DP91 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CSB-PGBD3P0DP91 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CSB-PGBD3P0DP91 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CSB-PGBD3P0DP91 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
CSB-PGBD3P0DP91 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CSB-PGBD3P0DP91 DDT-203ENST00000403754 569 ntTSL 3 BASIC24.44■■□□□ 1.5
CSB-PGBD3P0DP91 DDT-206ENST00000430101 573 ntTSL 2 BASIC24.44■■□□□ 1.5
CSB-PGBD3P0DP91 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC24.44■■□□□ 1.5
CSB-PGBD3P0DP91 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC24.44■■□□□ 1.5
CSB-PGBD3P0DP91 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC24.44■■□□□ 1.5
CSB-PGBD3P0DP91 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC24.44■■□□□ 1.5
CSB-PGBD3P0DP91 AL163051.1-201ENST00000569214 1512 ntBASIC24.44■■□□□ 1.5
CSB-PGBD3P0DP91 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC24.44■■□□□ 1.5
CSB-PGBD3P0DP91 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
CSB-PGBD3P0DP91 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CSB-PGBD3P0DP91 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CSB-PGBD3P0DP91 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CSB-PGBD3P0DP91 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC24.43■■□□□ 1.5
CSB-PGBD3P0DP91 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC24.43■■□□□ 1.5
CSB-PGBD3P0DP91 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CSB-PGBD3P0DP91 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CSB-PGBD3P0DP91 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms