Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
ZC3H4Q9UPT8 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC22.39■■□□□ 1.17
ZC3H4Q9UPT8 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 DANCR-204ENST00000444958 709 ntTSL 3 BASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 SART3-203ENST00000546611 1184 ntBASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 MTDHP5-201ENST00000598980 586 ntBASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
ZC3H4Q9UPT8 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 AC211486.1-202ENST00000416371 468 ntBASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 AC211476.1-201ENST00000503899 468 ntBASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 TP73-AS1-210ENST00000637775 1455 ntBASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
ZC3H4Q9UPT8 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 METTL21AP1-201ENST00000438852 635 ntBASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 AC092910.1-201ENST00000482027 1129 ntBASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 PNMT-203ENST00000581428 677 ntTSL 2 BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
ZC3H4Q9UPT8 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
ZC3H4Q9UPT8 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
ZC3H4Q9UPT8 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC22.35■■□□□ 1.17
ZC3H4Q9UPT8 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC22.35■■□□□ 1.17
ZC3H4Q9UPT8 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC22.35■■□□□ 1.17
ZC3H4Q9UPT8 RPS2P1-201ENST00000434010 821 ntBASIC22.35■■□□□ 1.17
ZC3H4Q9UPT8 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC22.35■■□□□ 1.17
ZC3H4Q9UPT8 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC22.35■■□□□ 1.17
ZC3H4Q9UPT8 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC22.35■■□□□ 1.17
ZC3H4Q9UPT8 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC22.35■■□□□ 1.17
ZC3H4Q9UPT8 PAM16-208ENST00000573553 722 ntTSL 2 BASIC22.35■■□□□ 1.17
ZC3H4Q9UPT8 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC22.35■■□□□ 1.17
ZC3H4Q9UPT8 NAT14-202ENST00000587400 416 ntTSL 5 BASIC22.35■■□□□ 1.17
ZC3H4Q9UPT8 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
ZC3H4Q9UPT8 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC22.35■■□□□ 1.17
ZC3H4Q9UPT8 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC22.35■■□□□ 1.17
ZC3H4Q9UPT8 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
ZC3H4Q9UPT8 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC22.35■■□□□ 1.17
ZC3H4Q9UPT8 AC112777.1-201ENST00000540175 1423 ntBASIC22.35■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms