Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL25A1Q9BXS0 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.7■□□□□ 0.58
COL25A1Q9BXS0 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.7■□□□□ 0.58
COL25A1Q9BXS0 HILS1-202ENST00000545329 423 ntBASIC18.7■□□□□ 0.58
COL25A1Q9BXS0 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC18.7■□□□□ 0.58
COL25A1Q9BXS0 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL25A1Q9BXS0 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL25A1Q9BXS0 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.7■□□□□ 0.58
COL25A1Q9BXS0 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 AP001271.2-201ENST00000624018 1556 ntBASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 AL138831.2-201ENST00000606564 490 ntBASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 AL662799.1-202ENST00000614205 422 ntBASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL25A1Q9BXS0 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 MIR943-201ENST00000401286 94 ntBASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 SPDYE22P-201ENST00000582158 798 ntBASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 AC022145.2-201ENST00000598203 171 ntBASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 AL133338.1-201ENST00000565695 1517 ntBASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL25A1Q9BXS0 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL25A1Q9BXS0 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL25A1Q9BXS0 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL25A1Q9BXS0 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL25A1Q9BXS0 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
COL25A1Q9BXS0 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL25A1Q9BXS0 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL25A1Q9BXS0 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL25A1Q9BXS0 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.67■□□□□ 0.58
COL25A1Q9BXS0 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC18.67■□□□□ 0.58
COL25A1Q9BXS0 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.67■□□□□ 0.58
COL25A1Q9BXS0 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL25A1Q9BXS0 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.67■□□□□ 0.58
COL25A1Q9BXS0 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.67■□□□□ 0.58
COL25A1Q9BXS0 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL25A1Q9BXS0 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 AL109659.2-201ENST00000606809 1674 ntBASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 AC008556.1-201ENST00000610908 2040 ntBASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 BX005266.1-201ENST00000473402 457 ntBASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 AC092658.1-201ENST00000505836 891 ntBASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 VPS29-207ENST00000549970 818 ntTSL 3 BASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 AC091812.2-201ENST00000619081 385 ntBASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL25A1Q9BXS0 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms