Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL5A3P25940 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL5A3P25940 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL5A3P25940 CSF3-203ENST00000394148 622 ntTSL 3 BASIC23.33■■□□□ 1.33
COL5A3P25940 RPL13AP23-201ENST00000480739 586 ntBASIC23.33■■□□□ 1.33
COL5A3P25940 SART3-203ENST00000546611 1184 ntBASIC23.33■■□□□ 1.33
COL5A3P25940 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC23.33■■□□□ 1.33
COL5A3P25940 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
COL5A3P25940 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
COL5A3P25940 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL5A3P25940 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC23.33■■□□□ 1.33
COL5A3P25940 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL5A3P25940 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL5A3P25940 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC23.33■■□□□ 1.33
COL5A3P25940 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC23.33■■□□□ 1.32
COL5A3P25940 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC23.33■■□□□ 1.32
COL5A3P25940 AC034105.1-201ENST00000563488 319 ntBASIC23.33■■□□□ 1.32
COL5A3P25940 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
COL5A3P25940 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC23.33■■□□□ 1.32
COL5A3P25940 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
COL5A3P25940 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL5A3P25940 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC23.32■■□□□ 1.32
COL5A3P25940 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC23.32■■□□□ 1.32
COL5A3P25940 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
COL5A3P25940 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
COL5A3P25940 TP73-AS1-210ENST00000637775 1455 ntBASIC23.32■■□□□ 1.32
COL5A3P25940 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
COL5A3P25940 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL5A3P25940 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC23.32■■□□□ 1.32
COL5A3P25940 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
COL5A3P25940 AC012640.2-201ENST00000561606 901 ntBASIC23.32■■□□□ 1.32
COL5A3P25940 AC010327.4-202ENST00000591484 748 ntBASIC23.32■■□□□ 1.32
COL5A3P25940 AC140113.2-201ENST00000604370 208 ntBASIC23.32■■□□□ 1.32
COL5A3P25940 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC23.32■■□□□ 1.32
COL5A3P25940 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC23.32■■□□□ 1.32
COL5A3P25940 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC23.32■■□□□ 1.32
COL5A3P25940 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC23.32■■□□□ 1.32
COL5A3P25940 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
COL5A3P25940 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC23.32■■□□□ 1.32
COL5A3P25940 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
COL5A3P25940 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC23.32■■□□□ 1.32
COL5A3P25940 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC23.32■■□□□ 1.32
COL5A3P25940 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
COL5A3P25940 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC23.31■■□□□ 1.32
COL5A3P25940 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL5A3P25940 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL5A3P25940 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC23.31■■□□□ 1.32
COL5A3P25940 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
COL5A3P25940 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
COL5A3P25940 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
COL5A3P25940 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC23.31■■□□□ 1.32
COL5A3P25940 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
COL5A3P25940 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL5A3P25940 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL5A3P25940 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC23.31■■□□□ 1.32
COL5A3P25940 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL5A3P25940 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL5A3P25940 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
COL5A3P25940 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
COL5A3P25940 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC23.3■■□□□ 1.32
COL5A3P25940 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC23.3■■□□□ 1.32
COL5A3P25940 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL5A3P25940 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC23.3■■□□□ 1.32
COL5A3P25940 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC23.3■■□□□ 1.32
COL5A3P25940 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
COL5A3P25940 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
COL5A3P25940 MED16-201ENST00000269814 1199 ntTSL 5 BASIC23.3■■□□□ 1.32
COL5A3P25940 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
COL5A3P25940 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
COL5A3P25940 RCN1P2-201ENST00000398357 915 ntBASIC23.3■■□□□ 1.32
COL5A3P25940 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC23.3■■□□□ 1.32
COL5A3P25940 NMU-202ENST00000505262 693 ntTSL 3 BASIC23.3■■□□□ 1.32
COL5A3P25940 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
COL5A3P25940 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC23.3■■□□□ 1.32
COL5A3P25940 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC23.3■■□□□ 1.32
COL5A3P25940 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL5A3P25940 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL5A3P25940 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
COL5A3P25940 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL5A3P25940 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL5A3P25940 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
COL5A3P25940 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL5A3P25940 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
COL5A3P25940 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL5A3P25940 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL5A3P25940 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC23.29■■□□□ 1.32
COL5A3P25940 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC23.29■■□□□ 1.32
COL5A3P25940 AC098831.1-202ENST00000438821 336 ntBASIC23.29■■□□□ 1.32
COL5A3P25940 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL5A3P25940 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC23.29■■□□□ 1.32
COL5A3P25940 CYGB-205ENST00000590175 830 ntTSL 3 BASIC23.29■■□□□ 1.32
COL5A3P25940 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC23.29■■□□□ 1.32
COL5A3P25940 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC23.29■■□□□ 1.32
COL5A3P25940 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
COL5A3P25940 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL5A3P25940 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC23.29■■□□□ 1.32
COL5A3P25940 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
COL5A3P25940 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
COL5A3P25940 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
COL5A3P25940 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms