Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AL096865.1-201ENST00000606796 927 ntBASIC22■■□□□ 1.11
SMC1BQ8NDV3 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC22■■□□□ 1.11
SMC1BQ8NDV3 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC22■■□□□ 1.11
SMC1BQ8NDV3 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 AC092474.2-201ENST00000424288 719 ntBASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 GREM1-201ENST00000560677 623 ntTSL 4 BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC21.99■■□□□ 1.11
SMC1BQ8NDV3 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC21.98■■□□□ 1.11
SMC1BQ8NDV3 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SMC1BQ8NDV3 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.98■■□□□ 1.11
SMC1BQ8NDV3 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
SMC1BQ8NDV3 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
SMC1BQ8NDV3 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SMC1BQ8NDV3 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC21.98■■□□□ 1.11
SMC1BQ8NDV3 BCRP1-201ENST00000444246 691 ntBASIC21.98■■□□□ 1.11
SMC1BQ8NDV3 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC21.98■■□□□ 1.11
SMC1BQ8NDV3 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC21.98■■□□□ 1.11
SMC1BQ8NDV3 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC21.98■■□□□ 1.11
SMC1BQ8NDV3 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC21.98■■□□□ 1.11
SMC1BQ8NDV3 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC21.98■■□□□ 1.11
SMC1BQ8NDV3 COPE-211ENST00000600932 1144 ntTSL 5 BASIC21.98■■□□□ 1.11
SMC1BQ8NDV3 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SMC1BQ8NDV3 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SMC1BQ8NDV3 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SMC1BQ8NDV3 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SMC1BQ8NDV3 AP005117.1-201ENST00000584346 1413 ntBASIC21.97■■□□□ 1.11
SMC1BQ8NDV3 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC21.97■■□□□ 1.11
SMC1BQ8NDV3 AC025062.2-201ENST00000605477 670 ntBASIC21.97■■□□□ 1.11
SMC1BQ8NDV3 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SMC1BQ8NDV3 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC21.97■■□□□ 1.11
SMC1BQ8NDV3 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SMC1BQ8NDV3 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SMC1BQ8NDV3 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
SMC1BQ8NDV3 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SMC1BQ8NDV3 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SMC1BQ8NDV3 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SMC1BQ8NDV3 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.97■■□□□ 1.11
SMC1BQ8NDV3 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
SMC1BQ8NDV3 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SMC1BQ8NDV3 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 CENPM-204ENST00000402420 688 ntTSL 5 BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 ELP6-205ENST00000439305 880 ntTSL 2 BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 SLC25A24-204ENST00000569674 2357 ntBASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC21.96■■□□□ 1.11
SMC1BQ8NDV3 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
SMC1BQ8NDV3 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.95■■□□□ 1.11
SMC1BQ8NDV3 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
SMC1BQ8NDV3 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 KIRREL3-AS3-201ENST00000404882 831 ntBASIC21.95■■□□□ 1.1
SMC1BQ8NDV3 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC21.95■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms