Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC20.85■□□□□ 0.93
HTTP42858 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HTTP42858 ALG1L5P-201ENST00000482043 771 ntBASIC20.85■□□□□ 0.93
HTTP42858 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC20.85■□□□□ 0.93
HTTP42858 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HTTP42858 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HTTP42858 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.85■□□□□ 0.93
HTTP42858 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HTTP42858 TP73-AS1-210ENST00000637775 1455 ntBASIC20.85■□□□□ 0.93
HTTP42858 PAN3-AS1-201ENST00000563843 1351 ntBASIC20.85■□□□□ 0.93
HTTP42858 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HTTP42858 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HTTP42858 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.84■□□□□ 0.93
HTTP42858 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.84■□□□□ 0.93
HTTP42858 KRT89P-201ENST00000620027 1478 ntBASIC20.84■□□□□ 0.93
HTTP42858 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HTTP42858 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
HTTP42858 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HTTP42858 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
HTTP42858 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HTTP42858 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC20.84■□□□□ 0.93
HTTP42858 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC20.84■□□□□ 0.93
HTTP42858 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC20.84■□□□□ 0.93
HTTP42858 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC20.84■□□□□ 0.93
HTTP42858 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC20.84■□□□□ 0.93
HTTP42858 AL157384.1-201ENST00000445995 2473 ntBASIC20.84■□□□□ 0.93
HTTP42858 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
HTTP42858 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC20.84■□□□□ 0.93
HTTP42858 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC20.84■□□□□ 0.93
HTTP42858 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HTTP42858 KRT18P28-201ENST00000453838 1332 ntBASIC20.84■□□□□ 0.93
HTTP42858 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HTTP42858 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HTTP42858 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HTTP42858 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.83■□□□□ 0.93
HTTP42858 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC20.83■□□□□ 0.93
HTTP42858 RCN1P2-201ENST00000398357 915 ntBASIC20.83■□□□□ 0.93
HTTP42858 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC20.83■□□□□ 0.93
HTTP42858 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC20.83■□□□□ 0.93
HTTP42858 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC20.83■□□□□ 0.93
HTTP42858 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC20.83■□□□□ 0.93
HTTP42858 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
HTTP42858 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
HTTP42858 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.83■□□□□ 0.93
HTTP42858 AC034236.2-201ENST00000606662 1610 ntBASIC20.83■□□□□ 0.93
HTTP42858 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HTTP42858 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC20.83■□□□□ 0.92
HTTP42858 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC20.83■□□□□ 0.92
HTTP42858 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
HTTP42858 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
HTTP42858 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC20.82■□□□□ 0.92
HTTP42858 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
HTTP42858 UNC93B6-202ENST00000528242 690 ntBASIC20.82■□□□□ 0.92
HTTP42858 INTS4P1-201ENST00000438455 1935 ntBASIC20.82■□□□□ 0.92
HTTP42858 TEX21P-204ENST00000641479 1693 ntBASIC20.82■□□□□ 0.92
HTTP42858 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HTTP42858 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HTTP42858 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
HTTP42858 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HTTP42858 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
HTTP42858 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
HTTP42858 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
HTTP42858 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HTTP42858 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.82■□□□□ 0.92
HTTP42858 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HTTP42858 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HTTP42858 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
HTTP42858 CNN2P11-201ENST00000429351 262 ntBASIC20.82■□□□□ 0.92
HTTP42858 CYGB-205ENST00000590175 830 ntTSL 3 BASIC20.82■□□□□ 0.92
HTTP42858 MTDHP3-201ENST00000594186 672 ntBASIC20.82■□□□□ 0.92
HTTP42858 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC20.82■□□□□ 0.92
HTTP42858 AC239800.4-201ENST00000603712 296 ntBASIC20.82■□□□□ 0.92
HTTP42858 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC20.82■□□□□ 0.92
HTTP42858 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HTTP42858 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HTTP42858 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HTTP42858 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.82■□□□□ 0.92
HTTP42858 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC20.82■□□□□ 0.92
HTTP42858 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
HTTP42858 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC20.82■□□□□ 0.92
HTTP42858 AL138831.2-201ENST00000606564 490 ntBASIC20.82■□□□□ 0.92
HTTP42858 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC20.82■□□□□ 0.92
HTTP42858 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
HTTP42858 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.82■□□□□ 0.92
HTTP42858 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.81■□□□□ 0.92
HTTP42858 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HTTP42858 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HTTP42858 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.81■□□□□ 0.92
HTTP42858 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HTTP42858 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HTTP42858 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.81■□□□□ 0.92
HTTP42858 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
HTTP42858 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HTTP42858 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HTTP42858 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
HTTP42858 KLK8-202ENST00000320838 456 ntTSL 5 BASIC20.81■□□□□ 0.92
HTTP42858 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
HTTP42858 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.81■□□□□ 0.92
HTTP42858 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HTTP42858 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 7.8 ms