Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
CUX1P39880 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC31.05■■■□□ 2.56
CUX1P39880 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC31.05■■■□□ 2.56
CUX1P39880 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
CUX1P39880 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CUX1P39880 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
CUX1P39880 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CUX1P39880 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC31.05■■■□□ 2.56
CUX1P39880 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC31.05■■■□□ 2.56
CUX1P39880 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CUX1P39880 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC31.05■■■□□ 2.56
CUX1P39880 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC31.05■■■□□ 2.56
CUX1P39880 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC31.05■■■□□ 2.56
CUX1P39880 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
CUX1P39880 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC31.04■■■□□ 2.56
CUX1P39880 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC31.04■■■□□ 2.56
CUX1P39880 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC31.04■■■□□ 2.56
CUX1P39880 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
CUX1P39880 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC31.04■■■□□ 2.56
CUX1P39880 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC31.04■■■□□ 2.56
CUX1P39880 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC31.04■■■□□ 2.56
CUX1P39880 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC31.04■■■□□ 2.56
CUX1P39880 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC31.04■■■□□ 2.56
CUX1P39880 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC31.04■■■□□ 2.56
CUX1P39880 POLI-202ENST00000406285 2030 ntTSL 2 BASIC31.04■■■□□ 2.56
CUX1P39880 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
CUX1P39880 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
CUX1P39880 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
CUX1P39880 TP73-AS1-210ENST00000637775 1455 ntBASIC31.04■■■□□ 2.56
CUX1P39880 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC31.04■■■□□ 2.56
CUX1P39880 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
CUX1P39880 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC31.04■■■□□ 2.56
CUX1P39880 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
CUX1P39880 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC31.03■■■□□ 2.56
CUX1P39880 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC31.03■■■□□ 2.56
CUX1P39880 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC31.03■■■□□ 2.56
CUX1P39880 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC31.03■■■□□ 2.56
CUX1P39880 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
CUX1P39880 PMS2P7-201ENST00000506558 1336 ntBASIC31.03■■■□□ 2.56
CUX1P39880 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
CUX1P39880 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC31.03■■■□□ 2.56
CUX1P39880 HIST2H3DP1-201ENST00000401004 416 ntBASIC31.03■■■□□ 2.56
CUX1P39880 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC31.03■■■□□ 2.56
CUX1P39880 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
CUX1P39880 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC31.03■■■□□ 2.56
CUX1P39880 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
CUX1P39880 AL024508.2-201ENST00000607749 1894 ntBASIC31.02■■■□□ 2.56
CUX1P39880 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC31.02■■■□□ 2.56
CUX1P39880 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC31.02■■■□□ 2.56
CUX1P39880 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC31.02■■■□□ 2.56
CUX1P39880 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC31.02■■■□□ 2.56
CUX1P39880 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
CUX1P39880 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
CUX1P39880 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC31.02■■■□□ 2.56
CUX1P39880 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
CUX1P39880 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC31.02■■■□□ 2.56
CUX1P39880 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC31.02■■■□□ 2.56
CUX1P39880 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
CUX1P39880 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
CUX1P39880 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC31.02■■■□□ 2.56
CUX1P39880 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
CUX1P39880 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
CUX1P39880 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC31.02■■■□□ 2.56
CUX1P39880 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
CUX1P39880 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC31.02■■■□□ 2.56
CUX1P39880 PAN3-AS1-201ENST00000563843 1351 ntBASIC31.02■■■□□ 2.56
CUX1P39880 MIR149-201ENST00000384879 89 ntBASIC31.02■■■□□ 2.56
CUX1P39880 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
CUX1P39880 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC31.02■■■□□ 2.56
CUX1P39880 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC31.02■■■□□ 2.56
CUX1P39880 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
CUX1P39880 AC116407.3-201ENST00000623905 1129 ntBASIC31.02■■■□□ 2.56
CUX1P39880 INTS4P1-201ENST00000438455 1935 ntBASIC31.02■■■□□ 2.56
CUX1P39880 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC31.02■■■□□ 2.56
CUX1P39880 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
CUX1P39880 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
CUX1P39880 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC31.01■■■□□ 2.56
CUX1P39880 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC31.01■■■□□ 2.55
CUX1P39880 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
CUX1P39880 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC31.01■■■□□ 2.55
CUX1P39880 SART3-203ENST00000546611 1184 ntBASIC31.01■■■□□ 2.55
CUX1P39880 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC31.01■■■□□ 2.55
CUX1P39880 TERC-201ENST00000602385 541 ntBASIC31.01■■■□□ 2.55
CUX1P39880 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC31.01■■■□□ 2.55
CUX1P39880 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC31.01■■■□□ 2.55
CUX1P39880 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC31.01■■■□□ 2.55
CUX1P39880 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC31.01■■■□□ 2.55
CUX1P39880 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC31.01■■■□□ 2.55
CUX1P39880 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC31.01■■■□□ 2.55
CUX1P39880 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC31.01■■■□□ 2.55
CUX1P39880 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC31■■■□□ 2.55
CUX1P39880 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC31■■■□□ 2.55
CUX1P39880 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
CUX1P39880 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC31■■■□□ 2.55
CUX1P39880 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC31■■■□□ 2.55
CUX1P39880 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC31■■■□□ 2.55
CUX1P39880 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
CUX1P39880 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
CUX1P39880 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC31■■■□□ 2.55
CUX1P39880 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC31■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms