Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.93■□□□□ 0.62
CHFRQ96EP1 AC091607.1-201ENST00000490318 1060 ntBASIC18.93■□□□□ 0.62
CHFRQ96EP1 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.93■□□□□ 0.62
CHFRQ96EP1 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.93■□□□□ 0.62
CHFRQ96EP1 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.93■□□□□ 0.62
CHFRQ96EP1 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.93■□□□□ 0.62
CHFRQ96EP1 AL121772.3-201ENST00000610840 674 ntBASIC18.93■□□□□ 0.62
CHFRQ96EP1 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.93■□□□□ 0.62
CHFRQ96EP1 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.93■□□□□ 0.62
CHFRQ96EP1 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHFRQ96EP1 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
CHFRQ96EP1 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHFRQ96EP1 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.92■□□□□ 0.62
CHFRQ96EP1 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.92■□□□□ 0.62
CHFRQ96EP1 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.92■□□□□ 0.62
CHFRQ96EP1 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHFRQ96EP1 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHFRQ96EP1 LINC00167-201ENST00000530583 1419 ntBASIC18.92■□□□□ 0.62
CHFRQ96EP1 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHFRQ96EP1 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHFRQ96EP1 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHFRQ96EP1 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.92■□□□□ 0.62
CHFRQ96EP1 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.92■□□□□ 0.62
CHFRQ96EP1 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
CHFRQ96EP1 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHFRQ96EP1 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHFRQ96EP1 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHFRQ96EP1 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHFRQ96EP1 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
CHFRQ96EP1 AC104819.1-201ENST00000504587 486 ntBASIC18.92■□□□□ 0.62
CHFRQ96EP1 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHFRQ96EP1 AL160237.2-201ENST00000556165 472 ntBASIC18.92■□□□□ 0.62
CHFRQ96EP1 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.92■□□□□ 0.62
CHFRQ96EP1 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.92■□□□□ 0.62
CHFRQ96EP1 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CHFRQ96EP1 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHFRQ96EP1 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHFRQ96EP1 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.92■□□□□ 0.62
CHFRQ96EP1 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHFRQ96EP1 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.92■□□□□ 0.62
CHFRQ96EP1 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHFRQ96EP1 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHFRQ96EP1 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHFRQ96EP1 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHFRQ96EP1 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHFRQ96EP1 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.91■□□□□ 0.62
CHFRQ96EP1 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CHFRQ96EP1 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHFRQ96EP1 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.91■□□□□ 0.62
CHFRQ96EP1 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CHFRQ96EP1 AC074051.2-201ENST00000565115 352 ntBASIC18.91■□□□□ 0.62
CHFRQ96EP1 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.91■□□□□ 0.62
CHFRQ96EP1 SLC25A6P4-201ENST00000586535 553 ntBASIC18.91■□□□□ 0.62
CHFRQ96EP1 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.91■□□□□ 0.62
CHFRQ96EP1 AC138894.3-201ENST00000603787 634 ntBASIC18.91■□□□□ 0.62
CHFRQ96EP1 AL592071.1-201ENST00000611956 408 ntBASIC18.91■□□□□ 0.62
CHFRQ96EP1 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.91■□□□□ 0.62
CHFRQ96EP1 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHFRQ96EP1 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHFRQ96EP1 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
CHFRQ96EP1 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CHFRQ96EP1 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CHFRQ96EP1 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHFRQ96EP1 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.9■□□□□ 0.62
CHFRQ96EP1 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHFRQ96EP1 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHFRQ96EP1 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.9■□□□□ 0.62
CHFRQ96EP1 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHFRQ96EP1 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHFRQ96EP1 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHFRQ96EP1 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CHFRQ96EP1 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHFRQ96EP1 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHFRQ96EP1 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.9■□□□□ 0.62
CHFRQ96EP1 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
CHFRQ96EP1 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.9■□□□□ 0.62
CHFRQ96EP1 KRT16P4-201ENST00000453883 522 ntBASIC18.9■□□□□ 0.62
CHFRQ96EP1 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.9■□□□□ 0.62
CHFRQ96EP1 AC106795.1-205ENST00000512851 1056 ntBASIC18.9■□□□□ 0.62
CHFRQ96EP1 AP002469.2-201ENST00000531724 424 ntBASIC18.9■□□□□ 0.62
CHFRQ96EP1 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.9■□□□□ 0.62
CHFRQ96EP1 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.9■□□□□ 0.62
CHFRQ96EP1 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CHFRQ96EP1 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.9■□□□□ 0.62
CHFRQ96EP1 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.9■□□□□ 0.62
CHFRQ96EP1 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.9■□□□□ 0.62
CHFRQ96EP1 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
CHFRQ96EP1 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.9■□□□□ 0.62
CHFRQ96EP1 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHFRQ96EP1 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHFRQ96EP1 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHFRQ96EP1 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms