Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
ECHDC3Q96DC8 AC083849.1-201ENST00000615227 514 ntBASIC18.6■□□□□ 0.57
ECHDC3Q96DC8 AC079602.3-201ENST00000623931 403 ntBASIC18.6■□□□□ 0.57
ECHDC3Q96DC8 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ECHDC3Q96DC8 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ECHDC3Q96DC8 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ECHDC3Q96DC8 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
ECHDC3Q96DC8 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ECHDC3Q96DC8 MYLKP1-201ENST00000509077 1580 ntBASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 HBZP1-201ENST00000354915 429 ntBASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.59■□□□□ 0.57
ECHDC3Q96DC8 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ECHDC3Q96DC8 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
ECHDC3Q96DC8 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ECHDC3Q96DC8 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
ECHDC3Q96DC8 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ECHDC3Q96DC8 ARMC10P1-201ENST00000313754 855 ntBASIC18.58■□□□□ 0.56
ECHDC3Q96DC8 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
ECHDC3Q96DC8 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
ECHDC3Q96DC8 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.58■□□□□ 0.56
ECHDC3Q96DC8 AC092597.1-201ENST00000487352 616 ntBASIC18.58■□□□□ 0.56
ECHDC3Q96DC8 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.58■□□□□ 0.56
ECHDC3Q96DC8 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.58■□□□□ 0.56
ECHDC3Q96DC8 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.58■□□□□ 0.56
ECHDC3Q96DC8 AC009065.1-201ENST00000564055 1225 ntBASIC18.58■□□□□ 0.56
ECHDC3Q96DC8 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.58■□□□□ 0.56
ECHDC3Q96DC8 AC087388.1-201ENST00000571370 1112 ntBASIC18.58■□□□□ 0.56
ECHDC3Q96DC8 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.58■□□□□ 0.56
ECHDC3Q96DC8 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.58■□□□□ 0.56
ECHDC3Q96DC8 AL121956.5-201ENST00000625261 221 ntBASIC18.58■□□□□ 0.56
ECHDC3Q96DC8 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
ECHDC3Q96DC8 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
ECHDC3Q96DC8 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
ECHDC3Q96DC8 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
ECHDC3Q96DC8 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 TNXA-203ENST00000507684 2038 ntBASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 HLA-F-220ENST00000434407 884 ntBASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 PVRIG2P-201ENST00000435460 978 ntBASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 SPDYE13P-201ENST00000445314 798 ntBASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 LINC01311-201ENST00000565162 1445 ntBASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
ECHDC3Q96DC8 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ECHDC3Q96DC8 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ECHDC3Q96DC8 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
ECHDC3Q96DC8 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ECHDC3Q96DC8 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ECHDC3Q96DC8 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
ECHDC3Q96DC8 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
ECHDC3Q96DC8 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
ECHDC3Q96DC8 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms