Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.53■□□□□ 0.88
NOD1Q9Y239 TK1-205ENST00000590862 642 ntTSL 3 BASIC20.53■□□□□ 0.88
NOD1Q9Y239 GPR32P1-201ENST00000601788 811 ntBASIC20.53■□□□□ 0.88
NOD1Q9Y239 AC099336.1-202ENST00000602961 463 ntBASIC20.53■□□□□ 0.88
NOD1Q9Y239 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC20.53■□□□□ 0.88
NOD1Q9Y239 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.53■□□□□ 0.88
NOD1Q9Y239 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC20.53■□□□□ 0.88
NOD1Q9Y239 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NOD1Q9Y239 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
NOD1Q9Y239 AC006333.2-201ENST00000607957 2099 ntBASIC20.53■□□□□ 0.88
NOD1Q9Y239 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
NOD1Q9Y239 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NOD1Q9Y239 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.53■□□□□ 0.88
NOD1Q9Y239 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
NOD1Q9Y239 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.53■□□□□ 0.88
NOD1Q9Y239 FEM1AP3-201ENST00000403722 1741 ntBASIC20.53■□□□□ 0.88
NOD1Q9Y239 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NOD1Q9Y239 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
NOD1Q9Y239 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NOD1Q9Y239 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
NOD1Q9Y239 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.52■□□□□ 0.88
NOD1Q9Y239 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
NOD1Q9Y239 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NOD1Q9Y239 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.52■□□□□ 0.88
NOD1Q9Y239 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.52■□□□□ 0.88
NOD1Q9Y239 KRT8P32-201ENST00000512863 1461 ntBASIC20.52■□□□□ 0.88
NOD1Q9Y239 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NOD1Q9Y239 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
NOD1Q9Y239 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NOD1Q9Y239 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NOD1Q9Y239 AP000347.1-202ENST00000435868 847 ntBASIC20.52■□□□□ 0.88
NOD1Q9Y239 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.52■□□□□ 0.88
NOD1Q9Y239 AC079781.3-201ENST00000449110 356 ntBASIC20.52■□□□□ 0.88
NOD1Q9Y239 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC20.52■□□□□ 0.88
NOD1Q9Y239 GUSBP12-201ENST00000513727 720 ntBASIC20.52■□□□□ 0.88
NOD1Q9Y239 MIR3180-4-201ENST00000582223 153 ntBASIC20.52■□□□□ 0.88
NOD1Q9Y239 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.52■□□□□ 0.88
NOD1Q9Y239 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NOD1Q9Y239 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NOD1Q9Y239 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NOD1Q9Y239 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NOD1Q9Y239 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NOD1Q9Y239 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.52■□□□□ 0.88
NOD1Q9Y239 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
NOD1Q9Y239 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
NOD1Q9Y239 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
NOD1Q9Y239 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
NOD1Q9Y239 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
NOD1Q9Y239 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
NOD1Q9Y239 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
NOD1Q9Y239 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
NOD1Q9Y239 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.51■□□□□ 0.87
NOD1Q9Y239 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NOD1Q9Y239 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NOD1Q9Y239 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
NOD1Q9Y239 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.51■□□□□ 0.87
NOD1Q9Y239 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC20.51■□□□□ 0.87
NOD1Q9Y239 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
NOD1Q9Y239 AC233702.3-201ENST00000578656 1387 ntBASIC20.51■□□□□ 0.87
NOD1Q9Y239 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NOD1Q9Y239 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NOD1Q9Y239 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
NOD1Q9Y239 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NOD1Q9Y239 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NOD1Q9Y239 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC20.51■□□□□ 0.87
NOD1Q9Y239 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
NOD1Q9Y239 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
NOD1Q9Y239 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC20.51■□□□□ 0.87
NOD1Q9Y239 VENTXP7-201ENST00000475503 772 ntBASIC20.51■□□□□ 0.87
NOD1Q9Y239 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC20.51■□□□□ 0.87
NOD1Q9Y239 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NOD1Q9Y239 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.51■□□□□ 0.87
NOD1Q9Y239 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NOD1Q9Y239 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NOD1Q9Y239 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
NOD1Q9Y239 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NOD1Q9Y239 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NOD1Q9Y239 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NOD1Q9Y239 TREX1-205ENST00000625293 1783 ntBASIC20.51■□□□□ 0.87
NOD1Q9Y239 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NOD1Q9Y239 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
NOD1Q9Y239 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NOD1Q9Y239 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.5■□□□□ 0.87
NOD1Q9Y239 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.5■□□□□ 0.87
NOD1Q9Y239 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NOD1Q9Y239 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NOD1Q9Y239 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.5■□□□□ 0.87
NOD1Q9Y239 PCDHAC2-203ENST00000615316 3011 ntBASIC20.5■□□□□ 0.87
NOD1Q9Y239 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NOD1Q9Y239 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC20.5■□□□□ 0.87
NOD1Q9Y239 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NOD1Q9Y239 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC20.5■□□□□ 0.87
NOD1Q9Y239 AC079776.4-201ENST00000511039 504 ntBASIC20.5■□□□□ 0.87
NOD1Q9Y239 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.5■□□□□ 0.87
NOD1Q9Y239 AC009065.1-201ENST00000564055 1225 ntBASIC20.5■□□□□ 0.87
NOD1Q9Y239 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.5■□□□□ 0.87
NOD1Q9Y239 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC20.5■□□□□ 0.87
NOD1Q9Y239 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
NOD1Q9Y239 AC024563.2-201ENST00000603282 481 ntBASIC20.5■□□□□ 0.87
NOD1Q9Y239 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms