Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
USP42Q9H9J4 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC23.66■■□□□ 1.38
USP42Q9H9J4 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
USP42Q9H9J4 AL032819.2-201ENST00000624543 2162 ntBASIC23.66■■□□□ 1.38
USP42Q9H9J4 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC23.66■■□□□ 1.38
USP42Q9H9J4 IGHV3-47-201ENST00000425060 335 ntBASIC23.66■■□□□ 1.38
USP42Q9H9J4 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC23.66■■□□□ 1.38
USP42Q9H9J4 ABR-204ENST00000543210 1049 ntTSL 2 BASIC23.66■■□□□ 1.38
USP42Q9H9J4 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC23.66■■□□□ 1.38
USP42Q9H9J4 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC23.66■■□□□ 1.38
USP42Q9H9J4 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC23.66■■□□□ 1.38
USP42Q9H9J4 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
USP42Q9H9J4 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
USP42Q9H9J4 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC23.66■■□□□ 1.38
USP42Q9H9J4 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
USP42Q9H9J4 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
USP42Q9H9J4 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC23.66■■□□□ 1.38
USP42Q9H9J4 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP42Q9H9J4 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP42Q9H9J4 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC23.65■■□□□ 1.38
USP42Q9H9J4 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
USP42Q9H9J4 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC23.65■■□□□ 1.38
USP42Q9H9J4 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP42Q9H9J4 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
USP42Q9H9J4 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
USP42Q9H9J4 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP42Q9H9J4 AP000593.1-201ENST00000393668 712 ntBASIC23.65■■□□□ 1.38
USP42Q9H9J4 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC23.65■■□□□ 1.38
USP42Q9H9J4 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
USP42Q9H9J4 IGHV3-41-201ENST00000613121 348 ntBASIC23.65■■□□□ 1.38
USP42Q9H9J4 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
USP42Q9H9J4 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
USP42Q9H9J4 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC23.65■■□□□ 1.38
USP42Q9H9J4 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
USP42Q9H9J4 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
USP42Q9H9J4 AL512353.2-201ENST00000448759 1962 ntBASIC23.64■■□□□ 1.38
USP42Q9H9J4 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
USP42Q9H9J4 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.38
USP42Q9H9J4 BET1L-206ENST00000486280 665 ntTSL 3 BASIC23.64■■□□□ 1.38
USP42Q9H9J4 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC23.64■■□□□ 1.38
USP42Q9H9J4 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC23.64■■□□□ 1.38
USP42Q9H9J4 Z69720.1-201ENST00000601483 472 ntBASIC23.64■■□□□ 1.38
USP42Q9H9J4 AC120114.3-201ENST00000611923 658 ntBASIC23.64■■□□□ 1.38
USP42Q9H9J4 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.38
USP42Q9H9J4 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
USP42Q9H9J4 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
USP42Q9H9J4 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
USP42Q9H9J4 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
USP42Q9H9J4 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
USP42Q9H9J4 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP42Q9H9J4 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
USP42Q9H9J4 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
USP42Q9H9J4 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP42Q9H9J4 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP42Q9H9J4 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC23.63■■□□□ 1.37
USP42Q9H9J4 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
USP42Q9H9J4 ELP6-205ENST00000439305 880 ntTSL 2 BASIC23.63■■□□□ 1.37
USP42Q9H9J4 PENK-208ENST00000523051 772 ntTSL 5 BASIC23.63■■□□□ 1.37
USP42Q9H9J4 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC23.63■■□□□ 1.37
USP42Q9H9J4 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC23.63■■□□□ 1.37
USP42Q9H9J4 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP42Q9H9J4 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC23.63■■□□□ 1.37
USP42Q9H9J4 GPR32P1-201ENST00000601788 811 ntBASIC23.63■■□□□ 1.37
USP42Q9H9J4 AL592071.1-201ENST00000611956 408 ntBASIC23.63■■□□□ 1.37
USP42Q9H9J4 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC23.63■■□□□ 1.37
USP42Q9H9J4 BX640515.1-201ENST00000617215 977 ntBASIC23.63■■□□□ 1.37
USP42Q9H9J4 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC23.63■■□□□ 1.37
USP42Q9H9J4 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC23.63■■□□□ 1.37
USP42Q9H9J4 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
USP42Q9H9J4 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC23.63■■□□□ 1.37
USP42Q9H9J4 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC23.63■■□□□ 1.37
USP42Q9H9J4 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
USP42Q9H9J4 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
USP42Q9H9J4 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP42Q9H9J4 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
USP42Q9H9J4 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
USP42Q9H9J4 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC23.63■■□□□ 1.37
USP42Q9H9J4 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP42Q9H9J4 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
USP42Q9H9J4 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
USP42Q9H9J4 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
USP42Q9H9J4 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP42Q9H9J4 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP42Q9H9J4 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC23.62■■□□□ 1.37
USP42Q9H9J4 ENSA-205ENST00000361532 792 ntTSL 2 BASIC23.62■■□□□ 1.37
USP42Q9H9J4 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
USP42Q9H9J4 TEX30-205ENST00000376029 959 ntTSL 2 BASIC23.62■■□□□ 1.37
USP42Q9H9J4 FICD-205ENST00000552758 603 ntTSL 2 BASIC23.62■■□□□ 1.37
USP42Q9H9J4 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC23.62■■□□□ 1.37
USP42Q9H9J4 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
USP42Q9H9J4 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
USP42Q9H9J4 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
USP42Q9H9J4 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP42Q9H9J4 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
USP42Q9H9J4 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC23.62■■□□□ 1.37
USP42Q9H9J4 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP42Q9H9J4 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
USP42Q9H9J4 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC23.62■■□□□ 1.37
USP42Q9H9J4 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC23.62■■□□□ 1.37
USP42Q9H9J4 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC23.62■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms