Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 AC125437.2-201ENST00000625180 2167 ntBASIC17.9■□□□□ 0.46
COL28A1Q2UY09 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 LINC00265-3P-201ENST00000447588 903 ntBASIC17.9■□□□□ 0.46
COL28A1Q2UY09 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL28A1Q2UY09 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.46
COL28A1Q2UY09 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.89■□□□□ 0.46
COL28A1Q2UY09 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.46
COL28A1Q2UY09 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 IL9RP2-201ENST00000423948 1312 ntBASIC17.89■□□□□ 0.45
COL28A1Q2UY09 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.89■□□□□ 0.45
COL28A1Q2UY09 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 KRT16P4-201ENST00000453883 522 ntBASIC17.88■□□□□ 0.45
COL28A1Q2UY09 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 KRT18P58-201ENST00000527480 1120 ntBASIC17.88■□□□□ 0.45
COL28A1Q2UY09 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 AL139424.1-201ENST00000607572 797 ntBASIC17.88■□□□□ 0.45
COL28A1Q2UY09 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
COL28A1Q2UY09 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms