Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL9A1P20849 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
COL9A1P20849 COPE-202ENST00000349893 948 ntTSL 2 BASIC19.19■□□□□ 0.66
COL9A1P20849 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.19■□□□□ 0.66
COL9A1P20849 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC19.19■□□□□ 0.66
COL9A1P20849 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL9A1P20849 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
COL9A1P20849 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC19.19■□□□□ 0.66
COL9A1P20849 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL9A1P20849 CD63-204ENST00000546939 779 ntTSL 3 BASIC19.19■□□□□ 0.66
COL9A1P20849 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC19.19■□□□□ 0.66
COL9A1P20849 AC034105.1-201ENST00000563488 319 ntBASIC19.19■□□□□ 0.66
COL9A1P20849 AL157384.1-201ENST00000445995 2473 ntBASIC19.19■□□□□ 0.66
COL9A1P20849 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL9A1P20849 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL9A1P20849 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL9A1P20849 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
COL9A1P20849 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL9A1P20849 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL9A1P20849 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL9A1P20849 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.18■□□□□ 0.66
COL9A1P20849 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.18■□□□□ 0.66
COL9A1P20849 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL9A1P20849 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL9A1P20849 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL9A1P20849 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL9A1P20849 RPS2P28-201ENST00000314255 741 ntBASIC19.18■□□□□ 0.66
COL9A1P20849 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
COL9A1P20849 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.18■□□□□ 0.66
COL9A1P20849 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC19.18■□□□□ 0.66
COL9A1P20849 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC19.18■□□□□ 0.66
COL9A1P20849 AP002472.1-201ENST00000577490 586 ntBASIC19.18■□□□□ 0.66
COL9A1P20849 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC19.18■□□□□ 0.66
COL9A1P20849 AL606495.2-201ENST00000605867 535 ntBASIC19.18■□□□□ 0.66
COL9A1P20849 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.18■□□□□ 0.66
COL9A1P20849 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL9A1P20849 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL9A1P20849 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.18■□□□□ 0.66
COL9A1P20849 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL9A1P20849 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL9A1P20849 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL9A1P20849 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL9A1P20849 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.17■□□□□ 0.66
COL9A1P20849 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL9A1P20849 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL9A1P20849 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL9A1P20849 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL9A1P20849 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL9A1P20849 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL9A1P20849 KLK8-202ENST00000320838 456 ntTSL 5 BASIC19.17■□□□□ 0.66
COL9A1P20849 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.17■□□□□ 0.66
COL9A1P20849 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL9A1P20849 HLA-F-220ENST00000434407 884 ntBASIC19.17■□□□□ 0.66
COL9A1P20849 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
COL9A1P20849 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
COL9A1P20849 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.17■□□□□ 0.66
COL9A1P20849 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC19.17■□□□□ 0.66
COL9A1P20849 AC002347.1-201ENST00000569543 541 ntBASIC19.17■□□□□ 0.66
COL9A1P20849 MTDHP5-201ENST00000598980 586 ntBASIC19.17■□□□□ 0.66
COL9A1P20849 AC084346.2-201ENST00000607097 949 ntBASIC19.17■□□□□ 0.66
COL9A1P20849 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.17■□□□□ 0.66
COL9A1P20849 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL9A1P20849 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.17■□□□□ 0.66
COL9A1P20849 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.17■□□□□ 0.66
COL9A1P20849 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.17■□□□□ 0.66
COL9A1P20849 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL9A1P20849 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL9A1P20849 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL9A1P20849 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL9A1P20849 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL9A1P20849 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL9A1P20849 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL9A1P20849 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
COL9A1P20849 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL9A1P20849 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.16■□□□□ 0.66
COL9A1P20849 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL9A1P20849 CSF3-203ENST00000394148 622 ntTSL 3 BASIC19.16■□□□□ 0.66
COL9A1P20849 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC19.16■□□□□ 0.66
COL9A1P20849 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.16■□□□□ 0.66
COL9A1P20849 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.16■□□□□ 0.66
COL9A1P20849 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL9A1P20849 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC19.16■□□□□ 0.66
COL9A1P20849 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.16■□□□□ 0.66
COL9A1P20849 AC079602.3-201ENST00000623931 403 ntBASIC19.16■□□□□ 0.66
COL9A1P20849 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL9A1P20849 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
COL9A1P20849 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL9A1P20849 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL9A1P20849 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL9A1P20849 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.16■□□□□ 0.66
COL9A1P20849 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL9A1P20849 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL9A1P20849 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL9A1P20849 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL9A1P20849 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL9A1P20849 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL9A1P20849 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL9A1P20849 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL9A1P20849 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL9A1P20849 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms