Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC35.51■■■■□ 3.28
SHROOM4Q9ULL8 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC35.51■■■■□ 3.27
SHROOM4Q9ULL8 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC35.51■■■■□ 3.27
SHROOM4Q9ULL8 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC35.51■■■■□ 3.27
SHROOM4Q9ULL8 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC35.51■■■■□ 3.27
SHROOM4Q9ULL8 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC35.51■■■■□ 3.27
SHROOM4Q9ULL8 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC35.51■■■■□ 3.27
SHROOM4Q9ULL8 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC35.5■■■■□ 3.27
SHROOM4Q9ULL8 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC35.5■■■■□ 3.27
SHROOM4Q9ULL8 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC35.5■■■■□ 3.27
SHROOM4Q9ULL8 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC35.5■■■■□ 3.27
SHROOM4Q9ULL8 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC35.5■■■■□ 3.27
SHROOM4Q9ULL8 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC35.5■■■■□ 3.27
SHROOM4Q9ULL8 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC35.5■■■■□ 3.27
SHROOM4Q9ULL8 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC35.5■■■■□ 3.27
SHROOM4Q9ULL8 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC35.5■■■■□ 3.27
SHROOM4Q9ULL8 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC35.5■■■■□ 3.27
SHROOM4Q9ULL8 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC35.5■■■■□ 3.27
SHROOM4Q9ULL8 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC35.49■■■■□ 3.27
SHROOM4Q9ULL8 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC35.49■■■■□ 3.27
SHROOM4Q9ULL8 MCCD1P1-208ENST00000445732 328 ntBASIC35.49■■■■□ 3.27
SHROOM4Q9ULL8 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC35.49■■■■□ 3.27
SHROOM4Q9ULL8 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC35.49■■■■□ 3.27
SHROOM4Q9ULL8 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC35.49■■■■□ 3.27
SHROOM4Q9ULL8 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC35.49■■■■□ 3.27
SHROOM4Q9ULL8 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC35.49■■■■□ 3.27
SHROOM4Q9ULL8 AL391807.1-203ENST00000604392 2365 ntBASIC35.49■■■■□ 3.27
SHROOM4Q9ULL8 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC35.49■■■■□ 3.27
SHROOM4Q9ULL8 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC35.49■■■■□ 3.27
SHROOM4Q9ULL8 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC35.49■■■■□ 3.27
SHROOM4Q9ULL8 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC35.48■■■■□ 3.27
SHROOM4Q9ULL8 AC074051.2-201ENST00000565115 352 ntBASIC35.48■■■■□ 3.27
SHROOM4Q9ULL8 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC35.48■■■■□ 3.27
SHROOM4Q9ULL8 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC35.48■■■■□ 3.27
SHROOM4Q9ULL8 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC35.48■■■■□ 3.27
SHROOM4Q9ULL8 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC35.48■■■■□ 3.27
SHROOM4Q9ULL8 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC35.48■■■■□ 3.27
SHROOM4Q9ULL8 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC35.48■■■■□ 3.27
SHROOM4Q9ULL8 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC35.48■■■■□ 3.27
SHROOM4Q9ULL8 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC35.48■■■■□ 3.27
SHROOM4Q9ULL8 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC35.48■■■■□ 3.27
SHROOM4Q9ULL8 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC35.48■■■■□ 3.27
SHROOM4Q9ULL8 AC233702.3-201ENST00000578656 1387 ntBASIC35.48■■■■□ 3.27
SHROOM4Q9ULL8 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC35.48■■■■□ 3.27
SHROOM4Q9ULL8 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC35.48■■■■□ 3.27
SHROOM4Q9ULL8 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC35.48■■■■□ 3.27
SHROOM4Q9ULL8 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC35.48■■■■□ 3.27
SHROOM4Q9ULL8 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC35.48■■■■□ 3.27
SHROOM4Q9ULL8 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC35.48■■■■□ 3.27
SHROOM4Q9ULL8 MIR3917-201ENST00000580971 93 ntBASIC35.48■■■■□ 3.27
SHROOM4Q9ULL8 AC064862.7-201ENST00000604520 867 ntBASIC35.48■■■■□ 3.27
SHROOM4Q9ULL8 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC35.47■■■■□ 3.27
SHROOM4Q9ULL8 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
SHROOM4Q9ULL8 AC073130.3-201ENST00000624389 2278 ntBASIC35.47■■■■□ 3.27
SHROOM4Q9ULL8 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC35.47■■■■□ 3.27
SHROOM4Q9ULL8 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC35.47■■■■□ 3.27
SHROOM4Q9ULL8 KRT8P3-201ENST00000519669 1449 ntBASIC35.47■■■■□ 3.27
SHROOM4Q9ULL8 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC35.47■■■■□ 3.27
SHROOM4Q9ULL8 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
SHROOM4Q9ULL8 BX842568.4-201ENST00000421222 227 ntBASIC35.47■■■■□ 3.27
SHROOM4Q9ULL8 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC35.47■■■■□ 3.27
SHROOM4Q9ULL8 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC35.47■■■■□ 3.27
SHROOM4Q9ULL8 MIR3180-5-201ENST00000583743 153 ntBASIC35.47■■■■□ 3.27
SHROOM4Q9ULL8 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
SHROOM4Q9ULL8 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
SHROOM4Q9ULL8 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC35.46■■■■□ 3.27
SHROOM4Q9ULL8 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC35.46■■■■□ 3.27
SHROOM4Q9ULL8 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
SHROOM4Q9ULL8 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC35.46■■■■□ 3.27
SHROOM4Q9ULL8 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC35.46■■■■□ 3.27
SHROOM4Q9ULL8 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC35.46■■■■□ 3.27
SHROOM4Q9ULL8 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC35.46■■■■□ 3.27
SHROOM4Q9ULL8 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC35.46■■■■□ 3.27
SHROOM4Q9ULL8 COX10-202ENST00000429152 875 ntTSL 2 BASIC35.46■■■■□ 3.27
SHROOM4Q9ULL8 AL157888.1-201ENST00000631930 593 ntBASIC35.46■■■■□ 3.27
SHROOM4Q9ULL8 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC35.46■■■■□ 3.27
SHROOM4Q9ULL8 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC35.46■■■■□ 3.27
SHROOM4Q9ULL8 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.27
SHROOM4Q9ULL8 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC35.45■■■■□ 3.27
SHROOM4Q9ULL8 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC35.45■■■■□ 3.27
SHROOM4Q9ULL8 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC35.45■■■■□ 3.27
SHROOM4Q9ULL8 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC35.45■■■■□ 3.27
SHROOM4Q9ULL8 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC35.45■■■■□ 3.27
SHROOM4Q9ULL8 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.27
SHROOM4Q9ULL8 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC35.45■■■■□ 3.27
SHROOM4Q9ULL8 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC35.45■■■■□ 3.27
SHROOM4Q9ULL8 AL390719.2-201ENST00000606993 987 ntBASIC35.45■■■■□ 3.27
SHROOM4Q9ULL8 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC35.45■■■■□ 3.27
SHROOM4Q9ULL8 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC35.45■■■■□ 3.27
SHROOM4Q9ULL8 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC35.45■■■■□ 3.27
SHROOM4Q9ULL8 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.27
SHROOM4Q9ULL8 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.27
SHROOM4Q9ULL8 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC35.45■■■■□ 3.27
SHROOM4Q9ULL8 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.26
SHROOM4Q9ULL8 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC35.45■■■■□ 3.26
SHROOM4Q9ULL8 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.26
SHROOM4Q9ULL8 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC35.44■■■■□ 3.26
SHROOM4Q9ULL8 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC35.44■■■■□ 3.26
SHROOM4Q9ULL8 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC35.44■■■■□ 3.26
SHROOM4Q9ULL8 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC35.44■■■■□ 3.26
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms