Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC24.41■■□□□ 1.5
RTF1Q92541 AC104390.1-201ENST00000555663 520 ntBASIC24.41■■□□□ 1.5
RTF1Q92541 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC24.41■■□□□ 1.5
RTF1Q92541 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC24.41■■□□□ 1.5
RTF1Q92541 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC24.41■■□□□ 1.5
RTF1Q92541 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RTF1Q92541 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RTF1Q92541 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC24.41■■□□□ 1.5
RTF1Q92541 AC006333.2-201ENST00000607957 2099 ntBASIC24.41■■□□□ 1.5
RTF1Q92541 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC24.41■■□□□ 1.5
RTF1Q92541 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RTF1Q92541 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RTF1Q92541 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC24.4■■□□□ 1.5
RTF1Q92541 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
RTF1Q92541 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC24.4■■□□□ 1.5
RTF1Q92541 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC24.4■■□□□ 1.5
RTF1Q92541 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RTF1Q92541 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RTF1Q92541 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
RTF1Q92541 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
RTF1Q92541 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
RTF1Q92541 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
RTF1Q92541 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC24.4■■□□□ 1.5
RTF1Q92541 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC24.4■■□□□ 1.5
RTF1Q92541 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
RTF1Q92541 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC24.4■■□□□ 1.5
RTF1Q92541 HEIH-201ENST00000623091 1652 ntBASIC24.4■■□□□ 1.5
RTF1Q92541 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RTF1Q92541 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
RTF1Q92541 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
RTF1Q92541 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
RTF1Q92541 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC24.39■■□□□ 1.5
RTF1Q92541 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC24.39■■□□□ 1.5
RTF1Q92541 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
RTF1Q92541 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC24.39■■□□□ 1.5
RTF1Q92541 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.5
RTF1Q92541 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC24.39■■□□□ 1.5
RTF1Q92541 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
RTF1Q92541 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
RTF1Q92541 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
RTF1Q92541 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
RTF1Q92541 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC24.39■■□□□ 1.49
RTF1Q92541 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
RTF1Q92541 FXN-203ENST00000396366 922 ntTSL 2 BASIC24.39■■□□□ 1.49
RTF1Q92541 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
RTF1Q92541 SPDYE13P-201ENST00000445314 798 ntBASIC24.39■■□□□ 1.49
RTF1Q92541 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC24.39■■□□□ 1.49
RTF1Q92541 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC24.39■■□□□ 1.49
RTF1Q92541 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
RTF1Q92541 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC24.39■■□□□ 1.49
RTF1Q92541 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC24.39■■□□□ 1.49
RTF1Q92541 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC24.39■■□□□ 1.49
RTF1Q92541 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC24.39■■□□□ 1.49
RTF1Q92541 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
RTF1Q92541 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
RTF1Q92541 AL049812.1-201ENST00000432563 2267 ntBASIC24.38■■□□□ 1.49
RTF1Q92541 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC24.38■■□□□ 1.49
RTF1Q92541 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
RTF1Q92541 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC24.38■■□□□ 1.49
RTF1Q92541 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC24.38■■□□□ 1.49
RTF1Q92541 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
RTF1Q92541 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC24.38■■□□□ 1.49
RTF1Q92541 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC24.38■■□□□ 1.49
RTF1Q92541 AC010240.3-201ENST00000607688 395 ntBASIC24.38■■□□□ 1.49
RTF1Q92541 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
RTF1Q92541 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC24.38■■□□□ 1.49
RTF1Q92541 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC24.38■■□□□ 1.49
RTF1Q92541 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
RTF1Q92541 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
RTF1Q92541 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC24.38■■□□□ 1.49
RTF1Q92541 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
RTF1Q92541 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
RTF1Q92541 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
RTF1Q92541 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
RTF1Q92541 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC24.37■■□□□ 1.49
RTF1Q92541 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC24.37■■□□□ 1.49
RTF1Q92541 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
RTF1Q92541 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
RTF1Q92541 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC24.37■■□□□ 1.49
RTF1Q92541 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
RTF1Q92541 NMU-205ENST00000511469 756 ntTSL 3 BASIC24.37■■□□□ 1.49
RTF1Q92541 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC24.37■■□□□ 1.49
RTF1Q92541 AC079602.3-201ENST00000623931 403 ntBASIC24.37■■□□□ 1.49
RTF1Q92541 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC24.37■■□□□ 1.49
RTF1Q92541 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
RTF1Q92541 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
RTF1Q92541 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC24.37■■□□□ 1.49
RTF1Q92541 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
RTF1Q92541 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC24.37■■□□□ 1.49
RTF1Q92541 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
RTF1Q92541 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC24.37■■□□□ 1.49
RTF1Q92541 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
RTF1Q92541 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
RTF1Q92541 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC24.36■■□□□ 1.49
RTF1Q92541 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC24.36■■□□□ 1.49
RTF1Q92541 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC24.36■■□□□ 1.49
RTF1Q92541 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
RTF1Q92541 AL357033.4-201ENST00000617703 1807 ntBASIC24.36■■□□□ 1.49
RTF1Q92541 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
RTF1Q92541 AL645929.1-201ENST00000420084 975 ntBASIC24.36■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms