Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC31.32■■■□□ 2.6
CUX1P39880 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CUX1P39880 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC31.32■■■□□ 2.6
CUX1P39880 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC31.32■■■□□ 2.6
CUX1P39880 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CUX1P39880 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC31.32■■■□□ 2.6
CUX1P39880 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CUX1P39880 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC31.32■■■□□ 2.6
CUX1P39880 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC31.32■■■□□ 2.6
CUX1P39880 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC31.31■■■□□ 2.6
CUX1P39880 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC31.31■■■□□ 2.6
CUX1P39880 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
CUX1P39880 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
CUX1P39880 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
CUX1P39880 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
CUX1P39880 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC31.31■■■□□ 2.6
CUX1P39880 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
CUX1P39880 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC31.31■■■□□ 2.6
CUX1P39880 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC31.31■■■□□ 2.6
CUX1P39880 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC31.31■■■□□ 2.6
CUX1P39880 MTMR9LP-203ENST00000426597 1545 ntBASIC31.31■■■□□ 2.6
CUX1P39880 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
CUX1P39880 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
CUX1P39880 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
CUX1P39880 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC31.31■■■□□ 2.6
CUX1P39880 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC31.31■■■□□ 2.6
CUX1P39880 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC31.31■■■□□ 2.6
CUX1P39880 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
CUX1P39880 CCS-201ENST00000310190 942 ntTSL 5 BASIC31.3■■■□□ 2.6
CUX1P39880 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC31.3■■■□□ 2.6
CUX1P39880 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC31.3■■■□□ 2.6
CUX1P39880 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC31.3■■■□□ 2.6
CUX1P39880 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC31.3■■■□□ 2.6
CUX1P39880 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC31.3■■■□□ 2.6
CUX1P39880 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
CUX1P39880 RPL18-209ENST00000550645 463 ntTSL 5 BASIC31.3■■■□□ 2.6
CUX1P39880 RPL18-214ENST00000552588 559 ntTSL 3 BASIC31.3■■■□□ 2.6
CUX1P39880 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC31.3■■■□□ 2.6
CUX1P39880 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC31.3■■■□□ 2.6
CUX1P39880 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC31.3■■■□□ 2.6
CUX1P39880 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
CUX1P39880 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
CUX1P39880 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
CUX1P39880 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
CUX1P39880 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
CUX1P39880 KRT18P58-201ENST00000527480 1120 ntBASIC31.29■■■□□ 2.6
CUX1P39880 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC31.29■■■□□ 2.6
CUX1P39880 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC31.29■■■□□ 2.6
CUX1P39880 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
CUX1P39880 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
CUX1P39880 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC31.29■■■□□ 2.6
CUX1P39880 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
CUX1P39880 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC31.29■■■□□ 2.6
CUX1P39880 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
CUX1P39880 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC31.29■■■□□ 2.6
CUX1P39880 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC31.29■■■□□ 2.6
CUX1P39880 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC31.29■■■□□ 2.6
CUX1P39880 LINC01521-201ENST00000504184 1943 ntBASIC31.29■■■□□ 2.6
CUX1P39880 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC31.29■■■□□ 2.6
CUX1P39880 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC31.29■■■□□ 2.6
CUX1P39880 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC31.29■■■□□ 2.6
CUX1P39880 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC31.29■■■□□ 2.6
CUX1P39880 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC31.28■■■□□ 2.6
CUX1P39880 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC31.28■■■□□ 2.6
CUX1P39880 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
CUX1P39880 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC31.28■■■□□ 2.6
CUX1P39880 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC31.28■■■□□ 2.6
CUX1P39880 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC31.28■■■□□ 2.6
CUX1P39880 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC31.28■■■□□ 2.6
CUX1P39880 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC31.28■■■□□ 2.6
CUX1P39880 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
CUX1P39880 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC31.28■■■□□ 2.6
CUX1P39880 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC31.28■■■□□ 2.6
CUX1P39880 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
CUX1P39880 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC31.28■■■□□ 2.6
CUX1P39880 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC31.27■■■□□ 2.6
CUX1P39880 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC31.27■■■□□ 2.6
CUX1P39880 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
CUX1P39880 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
CUX1P39880 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC31.27■■■□□ 2.6
CUX1P39880 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC31.27■■■□□ 2.6
CUX1P39880 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
CUX1P39880 MINOS1P3-201ENST00000457048 203 ntBASIC31.27■■■□□ 2.6
CUX1P39880 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC31.27■■■□□ 2.6
CUX1P39880 AC106730.1-201ENST00000566722 1090 ntBASIC31.27■■■□□ 2.6
CUX1P39880 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC31.27■■■□□ 2.6
CUX1P39880 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC31.27■■■□□ 2.6
CUX1P39880 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC31.27■■■□□ 2.6
CUX1P39880 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
CUX1P39880 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
CUX1P39880 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
CUX1P39880 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
CUX1P39880 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC31.26■■■□□ 2.59
CUX1P39880 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC31.26■■■□□ 2.59
CUX1P39880 FGFR3P6-201ENST00000457012 610 ntBASIC31.26■■■□□ 2.59
CUX1P39880 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC31.26■■■□□ 2.59
CUX1P39880 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC31.26■■■□□ 2.59
CUX1P39880 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC31.26■■■□□ 2.59
CUX1P39880 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC31.26■■■□□ 2.59
CUX1P39880 AL157384.1-201ENST00000445995 2473 ntBASIC31.26■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms