Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL2A1P02458 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL2A1P02458 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
COL2A1P02458 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC21.85■■□□□ 1.09
COL2A1P02458 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC21.85■■□□□ 1.09
COL2A1P02458 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC21.85■■□□□ 1.09
COL2A1P02458 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC21.85■■□□□ 1.09
COL2A1P02458 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC21.85■■□□□ 1.09
COL2A1P02458 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL2A1P02458 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC21.85■■□□□ 1.09
COL2A1P02458 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL2A1P02458 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL2A1P02458 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL2A1P02458 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL2A1P02458 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL2A1P02458 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL2A1P02458 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL2A1P02458 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL2A1P02458 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL2A1P02458 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
COL2A1P02458 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL2A1P02458 AC246785.2-201ENST00000432512 513 ntBASIC21.84■■□□□ 1.09
COL2A1P02458 RN7SL606P-201ENST00000472779 293 ntBASIC21.84■■□□□ 1.09
COL2A1P02458 AP000867.3-201ENST00000524675 377 ntBASIC21.84■■□□□ 1.09
COL2A1P02458 AL732292.2-201ENST00000609649 430 ntBASIC21.84■■□□□ 1.09
COL2A1P02458 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC21.84■■□□□ 1.09
COL2A1P02458 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC21.84■■□□□ 1.09
COL2A1P02458 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
COL2A1P02458 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL2A1P02458 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL2A1P02458 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.84■■□□□ 1.09
COL2A1P02458 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL2A1P02458 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
COL2A1P02458 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
COL2A1P02458 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC21.83■■□□□ 1.09
COL2A1P02458 AC104819.1-201ENST00000504587 486 ntBASIC21.83■■□□□ 1.09
COL2A1P02458 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC21.83■■□□□ 1.09
COL2A1P02458 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC21.83■■□□□ 1.09
COL2A1P02458 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
COL2A1P02458 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL2A1P02458 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
COL2A1P02458 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL2A1P02458 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL2A1P02458 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.83■■□□□ 1.09
COL2A1P02458 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC21.83■■□□□ 1.09
COL2A1P02458 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
COL2A1P02458 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
COL2A1P02458 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
COL2A1P02458 HES2-202ENST00000377836 507 ntTSL 2 BASIC21.83■■□□□ 1.08
COL2A1P02458 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC21.83■■□□□ 1.08
COL2A1P02458 PNN-202ENST00000553331 656 ntTSL 3 BASIC21.83■■□□□ 1.08
COL2A1P02458 AL353801.3-201ENST00000609898 542 ntBASIC21.83■■□□□ 1.08
COL2A1P02458 GXYLT1P4-201ENST00000613576 1192 ntBASIC21.83■■□□□ 1.08
COL2A1P02458 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC21.83■■□□□ 1.08
COL2A1P02458 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC21.83■■□□□ 1.08
COL2A1P02458 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC21.82■■□□□ 1.08
COL2A1P02458 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.82■■□□□ 1.08
COL2A1P02458 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL2A1P02458 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC21.82■■□□□ 1.08
COL2A1P02458 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL2A1P02458 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL2A1P02458 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL2A1P02458 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL2A1P02458 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL2A1P02458 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC21.82■■□□□ 1.08
COL2A1P02458 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC21.82■■□□□ 1.08
COL2A1P02458 AL163051.1-201ENST00000569214 1512 ntBASIC21.82■■□□□ 1.08
COL2A1P02458 MIR149-201ENST00000384879 89 ntBASIC21.82■■□□□ 1.08
COL2A1P02458 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL2A1P02458 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL2A1P02458 AC113404.2-201ENST00000507884 177 ntBASIC21.82■■□□□ 1.08
COL2A1P02458 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC21.82■■□□□ 1.08
COL2A1P02458 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC21.82■■□□□ 1.08
COL2A1P02458 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL2A1P02458 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL2A1P02458 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL2A1P02458 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL2A1P02458 AL161938.1-201ENST00000569833 2180 ntBASIC21.81■■□□□ 1.08
COL2A1P02458 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC21.81■■□□□ 1.08
COL2A1P02458 FDX1P1-201ENST00000449115 551 ntBASIC21.81■■□□□ 1.08
COL2A1P02458 CDV3-207ENST00000508481 661 ntTSL 3 BASIC21.81■■□□□ 1.08
COL2A1P02458 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL2A1P02458 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC21.81■■□□□ 1.08
COL2A1P02458 AC074051.2-201ENST00000565115 352 ntBASIC21.81■■□□□ 1.08
COL2A1P02458 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC21.81■■□□□ 1.08
COL2A1P02458 Z69720.1-201ENST00000601483 472 ntBASIC21.81■■□□□ 1.08
COL2A1P02458 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC21.81■■□□□ 1.08
COL2A1P02458 AL121772.3-201ENST00000610840 674 ntBASIC21.81■■□□□ 1.08
COL2A1P02458 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL2A1P02458 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC21.81■■□□□ 1.08
COL2A1P02458 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL2A1P02458 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL2A1P02458 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC21.81■■□□□ 1.08
COL2A1P02458 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC21.81■■□□□ 1.08
COL2A1P02458 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL2A1P02458 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
COL2A1P02458 AL353692.3-201ENST00000407031 1396 ntBASIC21.8■■□□□ 1.08
COL2A1P02458 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL2A1P02458 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
COL2A1P02458 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms