Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC23.55■■□□□ 1.36
NPHP1O15259 EMBP1-201ENST00000458200 901 ntBASIC23.55■■□□□ 1.36
NPHP1O15259 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
NPHP1O15259 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC23.55■■□□□ 1.36
NPHP1O15259 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
NPHP1O15259 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC23.55■■□□□ 1.36
NPHP1O15259 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC23.55■■□□□ 1.36
NPHP1O15259 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NPHP1O15259 KRT8P3-201ENST00000519669 1449 ntBASIC23.55■■□□□ 1.36
NPHP1O15259 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC23.55■■□□□ 1.36
NPHP1O15259 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NPHP1O15259 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC23.55■■□□□ 1.36
NPHP1O15259 AL157384.1-201ENST00000445995 2473 ntBASIC23.55■■□□□ 1.36
NPHP1O15259 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NPHP1O15259 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
NPHP1O15259 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
NPHP1O15259 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
NPHP1O15259 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
NPHP1O15259 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
NPHP1O15259 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
NPHP1O15259 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC23.54■■□□□ 1.36
NPHP1O15259 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
NPHP1O15259 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
NPHP1O15259 MIR662-201ENST00000384847 95 ntBASIC23.54■■□□□ 1.36
NPHP1O15259 KRT18P23-201ENST00000435622 1283 ntBASIC23.54■■□□□ 1.36
NPHP1O15259 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC23.54■■□□□ 1.36
NPHP1O15259 TOB2P1-201ENST00000469761 992 ntBASIC23.54■■□□□ 1.36
NPHP1O15259 FOSL1P1-201ENST00000511041 816 ntBASIC23.54■■□□□ 1.36
NPHP1O15259 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC23.54■■□□□ 1.36
NPHP1O15259 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
NPHP1O15259 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
NPHP1O15259 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
NPHP1O15259 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
NPHP1O15259 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC23.53■■□□□ 1.36
NPHP1O15259 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC23.53■■□□□ 1.36
NPHP1O15259 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
NPHP1O15259 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
NPHP1O15259 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
NPHP1O15259 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC23.53■■□□□ 1.36
NPHP1O15259 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC23.53■■□□□ 1.36
NPHP1O15259 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
NPHP1O15259 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC23.53■■□□□ 1.36
NPHP1O15259 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC23.53■■□□□ 1.36
NPHP1O15259 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
NPHP1O15259 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC23.53■■□□□ 1.36
NPHP1O15259 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
NPHP1O15259 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC23.53■■□□□ 1.36
NPHP1O15259 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC23.53■■□□□ 1.36
NPHP1O15259 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC23.53■■□□□ 1.36
NPHP1O15259 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
NPHP1O15259 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
NPHP1O15259 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC23.52■■□□□ 1.36
NPHP1O15259 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
NPHP1O15259 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
NPHP1O15259 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
NPHP1O15259 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC23.52■■□□□ 1.36
NPHP1O15259 PVRIG2P-201ENST00000435460 978 ntBASIC23.52■■□□□ 1.36
NPHP1O15259 AP000347.1-202ENST00000435868 847 ntBASIC23.52■■□□□ 1.36
NPHP1O15259 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC23.52■■□□□ 1.36
NPHP1O15259 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC23.52■■□□□ 1.36
NPHP1O15259 CIB2-208ENST00000560618 804 ntTSL 2 BASIC23.52■■□□□ 1.36
NPHP1O15259 TPSP2-201ENST00000561760 610 ntBASIC23.52■■□□□ 1.36
NPHP1O15259 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC23.52■■□□□ 1.36
NPHP1O15259 RNF126P1-202ENST00000569893 925 ntBASIC23.52■■□□□ 1.36
NPHP1O15259 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
NPHP1O15259 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
NPHP1O15259 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
NPHP1O15259 Z83836.1-201ENST00000624605 1642 ntBASIC23.51■■□□□ 1.35
NPHP1O15259 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP1O15259 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC23.51■■□□□ 1.35
NPHP1O15259 TCF3P1-201ENST00000423021 1937 ntBASIC23.51■■□□□ 1.35
NPHP1O15259 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP1O15259 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP1O15259 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC23.51■■□□□ 1.35
NPHP1O15259 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC23.51■■□□□ 1.35
NPHP1O15259 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP1O15259 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC23.51■■□□□ 1.35
NPHP1O15259 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP1O15259 DRAXINP1-201ENST00000437611 948 ntBASIC23.51■■□□□ 1.35
NPHP1O15259 AC009078.2-202ENST00000463353 338 ntBASIC23.51■■□□□ 1.35
NPHP1O15259 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC23.51■■□□□ 1.35
NPHP1O15259 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC23.51■■□□□ 1.35
NPHP1O15259 MPI-205ENST00000562606 1052 ntTSL 3 BASIC23.51■■□□□ 1.35
NPHP1O15259 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC23.51■■□□□ 1.35
NPHP1O15259 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
NPHP1O15259 TBCB-205ENST00000585746 875 ntTSL 3 BASIC23.51■■□□□ 1.35
NPHP1O15259 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC23.51■■□□□ 1.35
NPHP1O15259 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP1O15259 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP1O15259 LBX2-AS1-202ENST00000603175 2083 ntBASIC23.51■■□□□ 1.35
NPHP1O15259 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP1O15259 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP1O15259 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP1O15259 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
NPHP1O15259 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC23.51■■□□□ 1.35
NPHP1O15259 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP1O15259 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP1O15259 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP1O15259 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
NPHP1O15259 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms