Protein–RNA interactions for Protein: Q9NX63

CHCHD3, MICOS complex subunit MIC19, humanhuman

Known RBP Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3Q9NX63 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHCHD3Q9NX63 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHCHD3Q9NX63 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.43■□□□□ 0.38
CHCHD3Q9NX63 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHCHD3Q9NX63 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHCHD3Q9NX63 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC17.43■□□□□ 0.38
CHCHD3Q9NX63 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CHCHD3Q9NX63 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHCHD3Q9NX63 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHCHD3Q9NX63 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.43■□□□□ 0.38
CHCHD3Q9NX63 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 AC004854.2-201ENST00000608450 1441 ntBASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 HYI-206ENST00000372434 1025 ntTSL 5 BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 MCRIP2P1-201ENST00000394346 511 ntBASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 TERF1P5-201ENST00000477545 1207 ntBASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 STOX2-205ENST00000513034 807 ntTSL 3 BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 AL162412.1-201ENST00000567129 965 ntBASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 AL118508.1-201ENST00000613502 2345 ntBASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CHCHD3Q9NX63 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 Z98044.1-201ENST00000632503 1764 ntBASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 UBE2DNL-204ENST00000602536 740 ntBASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 WIZP1-201ENST00000531444 2299 ntBASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHCHD3Q9NX63 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CHCHD3Q9NX63 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHCHD3Q9NX63 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHCHD3Q9NX63 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHCHD3Q9NX63 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHCHD3Q9NX63 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CHCHD3Q9NX63 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
CHCHD3Q9NX63 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.4■□□□□ 0.38
CHCHD3Q9NX63 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHCHD3Q9NX63 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHCHD3Q9NX63 TEX21P-204ENST00000641479 1693 ntBASIC17.4■□□□□ 0.38
CHCHD3Q9NX63 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHCHD3Q9NX63 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC17.4■□□□□ 0.38
CHCHD3Q9NX63 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CHCHD3Q9NX63 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHCHD3Q9NX63 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHCHD3Q9NX63 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHCHD3Q9NX63 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
CHCHD3Q9NX63 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHCHD3Q9NX63 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHCHD3Q9NX63 MYCNOS-205ENST00000641950 531 ntBASIC17.4■□□□□ 0.38
CHCHD3Q9NX63 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms