Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
COL7A1Q02388 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
COL7A1Q02388 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC13.41□□□□□ -0.26
COL7A1Q02388 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC13.41□□□□□ -0.26
COL7A1Q02388 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
COL7A1Q02388 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL7A1Q02388 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC13.4□□□□□ -0.26
COL7A1Q02388 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC13.4□□□□□ -0.26
COL7A1Q02388 AC104390.1-201ENST00000555663 520 ntBASIC13.4□□□□□ -0.26
COL7A1Q02388 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC13.4□□□□□ -0.26
COL7A1Q02388 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC13.4□□□□□ -0.26
COL7A1Q02388 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC13.4□□□□□ -0.26
COL7A1Q02388 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL7A1Q02388 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL7A1Q02388 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL7A1Q02388 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
COL7A1Q02388 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL7A1Q02388 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL7A1Q02388 ZNF815P-204ENST00000434898 1737 ntBASIC13.4□□□□□ -0.26
COL7A1Q02388 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.26
COL7A1Q02388 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC13.4□□□□□ -0.26
COL7A1Q02388 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC13.4□□□□□ -0.26
COL7A1Q02388 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC13.4□□□□□ -0.26
COL7A1Q02388 RN7SL606P-201ENST00000472779 293 ntBASIC13.4□□□□□ -0.26
COL7A1Q02388 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC13.4□□□□□ -0.26
COL7A1Q02388 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC13.4□□□□□ -0.26
COL7A1Q02388 PAM16-208ENST00000573553 722 ntTSL 2 BASIC13.4□□□□□ -0.26
COL7A1Q02388 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC13.4□□□□□ -0.26
COL7A1Q02388 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC13.4□□□□□ -0.26
COL7A1Q02388 AC079834.2-201ENST00000609776 1949 ntBASIC13.4□□□□□ -0.26
COL7A1Q02388 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
COL7A1Q02388 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL7A1Q02388 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
COL7A1Q02388 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
COL7A1Q02388 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC13.4□□□□□ -0.26
COL7A1Q02388 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC13.4□□□□□ -0.27
COL7A1Q02388 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC13.4□□□□□ -0.27
COL7A1Q02388 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC13.4□□□□□ -0.27
COL7A1Q02388 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC13.4□□□□□ -0.27
COL7A1Q02388 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC13.4□□□□□ -0.27
COL7A1Q02388 FGFR3P6-201ENST00000457012 610 ntBASIC13.4□□□□□ -0.27
COL7A1Q02388 AC112482.1-201ENST00000492080 688 ntBASIC13.4□□□□□ -0.27
COL7A1Q02388 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC13.4□□□□□ -0.27
COL7A1Q02388 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC13.4□□□□□ -0.27
COL7A1Q02388 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC13.4□□□□□ -0.27
COL7A1Q02388 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL7A1Q02388 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL7A1Q02388 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL7A1Q02388 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
COL7A1Q02388 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL7A1Q02388 AC008556.1-201ENST00000610908 2040 ntBASIC13.39□□□□□ -0.27
COL7A1Q02388 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
COL7A1Q02388 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL7A1Q02388 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC13.39□□□□□ -0.27
COL7A1Q02388 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
COL7A1Q02388 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL7A1Q02388 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
COL7A1Q02388 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL7A1Q02388 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC13.39□□□□□ -0.27
COL7A1Q02388 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC13.39□□□□□ -0.27
COL7A1Q02388 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
COL7A1Q02388 PPOX-214ENST00000535223 664 ntTSL 3 BASIC13.39□□□□□ -0.27
COL7A1Q02388 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL7A1Q02388 MIR5100-201ENST00000579544 119 ntBASIC13.39□□□□□ -0.27
COL7A1Q02388 RPS15-207ENST00000591032 550 ntTSL 3 BASIC13.39□□□□□ -0.27
COL7A1Q02388 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL7A1Q02388 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL7A1Q02388 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL7A1Q02388 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC13.39□□□□□ -0.27
COL7A1Q02388 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL7A1Q02388 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
COL7A1Q02388 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
COL7A1Q02388 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC13.39□□□□□ -0.27
COL7A1Q02388 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL7A1Q02388 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
COL7A1Q02388 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC13.39□□□□□ -0.27
COL7A1Q02388 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC13.39□□□□□ -0.27
COL7A1Q02388 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC13.39□□□□□ -0.27
COL7A1Q02388 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC13.39□□□□□ -0.27
COL7A1Q02388 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC13.39□□□□□ -0.27
COL7A1Q02388 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL7A1Q02388 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC13.39□□□□□ -0.27
COL7A1Q02388 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL7A1Q02388 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL7A1Q02388 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL7A1Q02388 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC13.38□□□□□ -0.27
COL7A1Q02388 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL7A1Q02388 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC13.38□□□□□ -0.27
COL7A1Q02388 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC13.38□□□□□ -0.27
COL7A1Q02388 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
COL7A1Q02388 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC13.38□□□□□ -0.27
COL7A1Q02388 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
COL7A1Q02388 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC13.38□□□□□ -0.27
COL7A1Q02388 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL7A1Q02388 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL7A1Q02388 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL7A1Q02388 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC13.38□□□□□ -0.27
COL7A1Q02388 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL7A1Q02388 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
COL7A1Q02388 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms