Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 NUS1P2-201ENST00000417358 873 ntBASIC20.05■□□□□ 0.8
COL4A4P53420 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.05■□□□□ 0.8
COL4A4P53420 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC20.05■□□□□ 0.8
COL4A4P53420 ABBA01031661.1-201ENST00000634362 1253 ntBASIC20.05■□□□□ 0.8
COL4A4P53420 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A4P53420 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20.05■□□□□ 0.8
COL4A4P53420 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.05■□□□□ 0.8
COL4A4P53420 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A4P53420 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.05■□□□□ 0.8
COL4A4P53420 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A4P53420 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A4P53420 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.05■□□□□ 0.8
COL4A4P53420 Z83836.1-201ENST00000624605 1642 ntBASIC20.04■□□□□ 0.8
COL4A4P53420 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.04■□□□□ 0.8
COL4A4P53420 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A4P53420 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
COL4A4P53420 MCCD1P1-208ENST00000445732 328 ntBASIC20.04■□□□□ 0.8
COL4A4P53420 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A4P53420 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC20.04■□□□□ 0.8
COL4A4P53420 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.04■□□□□ 0.8
COL4A4P53420 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
COL4A4P53420 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A4P53420 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A4P53420 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.04■□□□□ 0.8
COL4A4P53420 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A4P53420 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A4P53420 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A4P53420 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.04■□□□□ 0.8
COL4A4P53420 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A4P53420 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL4A4P53420 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.03■□□□□ 0.8
COL4A4P53420 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A4P53420 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A4P53420 MIR1233-2-201ENST00000408138 82 ntBASIC20.03■□□□□ 0.8
COL4A4P53420 MIR1233-1-201ENST00000408722 82 ntBASIC20.03■□□□□ 0.8
COL4A4P53420 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.03■□□□□ 0.8
COL4A4P53420 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A4P53420 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC20.03■□□□□ 0.8
COL4A4P53420 AC092865.5-201ENST00000545435 363 ntBASIC20.03■□□□□ 0.8
COL4A4P53420 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC20.03■□□□□ 0.8
COL4A4P53420 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC20.03■□□□□ 0.8
COL4A4P53420 TK1-205ENST00000590862 642 ntTSL 3 BASIC20.03■□□□□ 0.8
COL4A4P53420 AL390719.2-201ENST00000606993 987 ntBASIC20.03■□□□□ 0.8
COL4A4P53420 AL592071.1-201ENST00000611956 408 ntBASIC20.03■□□□□ 0.8
COL4A4P53420 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A4P53420 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20.03■□□□□ 0.8
COL4A4P53420 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A4P53420 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A4P53420 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A4P53420 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
COL4A4P53420 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A4P53420 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.03■□□□□ 0.8
COL4A4P53420 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A4P53420 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A4P53420 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A4P53420 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A4P53420 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC20.03■□□□□ 0.8
COL4A4P53420 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A4P53420 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.03■□□□□ 0.8
COL4A4P53420 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A4P53420 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL4A4P53420 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A4P53420 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A4P53420 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
COL4A4P53420 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
COL4A4P53420 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A4P53420 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A4P53420 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A4P53420 AC093484.2-201ENST00000580996 2166 ntBASIC20.02■□□□□ 0.8
COL4A4P53420 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.02■□□□□ 0.8
COL4A4P53420 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.02■□□□□ 0.8
COL4A4P53420 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A4P53420 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.02■□□□□ 0.8
COL4A4P53420 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A4P53420 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.02■□□□□ 0.8
COL4A4P53420 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A4P53420 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
COL4A4P53420 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC20.02■□□□□ 0.8
COL4A4P53420 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL4A4P53420 AC117500.6-201ENST00000624871 588 ntBASIC20.02■□□□□ 0.8
COL4A4P53420 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
COL4A4P53420 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.02■□□□□ 0.8
COL4A4P53420 AC243591.1-201ENST00000452967 1364 ntBASIC20.02■□□□□ 0.8
COL4A4P53420 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL4A4P53420 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL4A4P53420 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A4P53420 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A4P53420 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
COL4A4P53420 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A4P53420 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A4P53420 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A4P53420 AL023284.2-201ENST00000405850 579 ntBASIC20.01■□□□□ 0.79
COL4A4P53420 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC20.01■□□□□ 0.79
COL4A4P53420 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC20.01■□□□□ 0.79
COL4A4P53420 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC20.01■□□□□ 0.79
COL4A4P53420 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.01■□□□□ 0.79
COL4A4P53420 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC20.01■□□□□ 0.79
COL4A4P53420 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A4P53420 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC20.01■□□□□ 0.79
COL4A4P53420 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms