Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC25.41■■□□□ 1.66
MSH5O43196 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC25.41■■□□□ 1.66
MSH5O43196 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC25.41■■□□□ 1.66
MSH5O43196 CLN6-204ENST00000564752 900 ntTSL 3 BASIC25.41■■□□□ 1.66
MSH5O43196 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC25.41■■□□□ 1.66
MSH5O43196 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC25.41■■□□□ 1.66
MSH5O43196 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
MSH5O43196 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
MSH5O43196 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC25.41■■□□□ 1.66
MSH5O43196 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC25.41■■□□□ 1.66
MSH5O43196 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC25.41■■□□□ 1.66
MSH5O43196 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC25.41■■□□□ 1.66
MSH5O43196 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC25.41■■□□□ 1.66
MSH5O43196 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC25.4■■□□□ 1.66
MSH5O43196 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
MSH5O43196 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
MSH5O43196 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
MSH5O43196 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC25.4■■□□□ 1.66
MSH5O43196 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC25.4■■□□□ 1.66
MSH5O43196 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
MSH5O43196 AL031133.1-201ENST00000406807 723 ntBASIC25.4■■□□□ 1.66
MSH5O43196 AC026396.1-201ENST00000419388 421 ntBASIC25.4■■□□□ 1.66
MSH5O43196 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC25.4■■□□□ 1.66
MSH5O43196 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
MSH5O43196 AC140125.3-202ENST00000504362 348 ntTSL 3 BASIC25.4■■□□□ 1.66
MSH5O43196 AC097488.1-201ENST00000507834 756 ntBASIC25.4■■□□□ 1.66
MSH5O43196 AC138965.1-201ENST00000509329 348 ntTSL 3 BASIC25.4■■□□□ 1.66
MSH5O43196 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC25.4■■□□□ 1.66
MSH5O43196 AF230666.2-201ENST00000602328 725 ntBASIC25.4■■□□□ 1.66
MSH5O43196 AC139887.4-201ENST00000607877 719 ntBASIC25.4■■□□□ 1.66
MSH5O43196 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC25.4■■□□□ 1.66
MSH5O43196 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC25.4■■□□□ 1.66
MSH5O43196 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC25.4■■□□□ 1.66
MSH5O43196 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC25.4■■□□□ 1.66
MSH5O43196 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
MSH5O43196 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
MSH5O43196 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC25.4■■□□□ 1.66
MSH5O43196 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC25.4■■□□□ 1.66
MSH5O43196 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
MSH5O43196 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC25.39■■□□□ 1.66
MSH5O43196 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
MSH5O43196 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
MSH5O43196 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
MSH5O43196 PCDHB18P-201ENST00000524813 2368 ntBASIC25.39■■□□□ 1.66
MSH5O43196 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC25.39■■□□□ 1.66
MSH5O43196 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
MSH5O43196 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC25.39■■□□□ 1.66
MSH5O43196 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC25.39■■□□□ 1.66
MSH5O43196 MESTP1-201ENST00000404287 994 ntBASIC25.39■■□□□ 1.66
MSH5O43196 MS4A6A-201ENST00000412309 1284 ntTSL 2 BASIC25.39■■□□□ 1.66
MSH5O43196 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC25.39■■□□□ 1.66
MSH5O43196 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC25.39■■□□□ 1.66
MSH5O43196 LINC02424-201ENST00000548512 1264 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
MSH5O43196 AP005121.2-201ENST00000583306 1101 ntBASIC25.39■■□□□ 1.66
MSH5O43196 AC008592.5-201ENST00000607856 547 ntBASIC25.39■■□□□ 1.66
MSH5O43196 AC093458.2-201ENST00000623150 629 ntBASIC25.39■■□□□ 1.66
MSH5O43196 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC25.39■■□□□ 1.66
MSH5O43196 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC25.39■■□□□ 1.65
MSH5O43196 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC25.39■■□□□ 1.65
MSH5O43196 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
MSH5O43196 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC25.39■■□□□ 1.65
MSH5O43196 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC25.39■■□□□ 1.65
MSH5O43196 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC25.39■■□□□ 1.65
MSH5O43196 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC25.38■■□□□ 1.65
MSH5O43196 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC25.38■■□□□ 1.65
MSH5O43196 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC25.38■■□□□ 1.65
MSH5O43196 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
MSH5O43196 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC25.38■■□□□ 1.65
MSH5O43196 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC25.38■■□□□ 1.65
MSH5O43196 AL133373.2-201ENST00000623187 2828 ntBASIC25.38■■□□□ 1.65
MSH5O43196 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
MSH5O43196 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC25.38■■□□□ 1.65
MSH5O43196 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
MSH5O43196 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
MSH5O43196 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC25.38■■□□□ 1.65
MSH5O43196 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC25.38■■□□□ 1.65
MSH5O43196 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC25.38■■□□□ 1.65
MSH5O43196 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC25.38■■□□□ 1.65
MSH5O43196 AP005242.2-201ENST00000580065 1175 ntBASIC25.38■■□□□ 1.65
MSH5O43196 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC25.38■■□□□ 1.65
MSH5O43196 FAM87A-204ENST00000613235 858 ntBASIC25.38■■□□□ 1.65
MSH5O43196 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
MSH5O43196 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
MSH5O43196 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
MSH5O43196 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC25.38■■□□□ 1.65
MSH5O43196 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC25.38■■□□□ 1.65
MSH5O43196 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC25.38■■□□□ 1.65
MSH5O43196 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC25.37■■□□□ 1.65
MSH5O43196 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
MSH5O43196 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
MSH5O43196 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC25.37■■□□□ 1.65
MSH5O43196 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
MSH5O43196 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC25.37■■□□□ 1.65
MSH5O43196 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC25.37■■□□□ 1.65
MSH5O43196 FCHO2-201ENST00000287761 1287 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
MSH5O43196 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC25.37■■□□□ 1.65
MSH5O43196 IPPK-202ENST00000375522 882 ntTSL 3 BASIC25.37■■□□□ 1.65
MSH5O43196 AL392088.1-201ENST00000428364 670 ntBASIC25.37■■□□□ 1.65
MSH5O43196 SAPCD2P2-201ENST00000431719 1174 ntBASIC25.37■■□□□ 1.65
MSH5O43196 AC009947.2-201ENST00000444014 672 ntBASIC25.37■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms