Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 AC027612.3-201ENST00000413684 1047 ntBASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 RARRES2P4-201ENST00000514074 484 ntBASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 TERF1P2-201ENST00000583350 1212 ntBASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 MYCNOS-205ENST00000641950 531 ntBASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 AL139384.1-201ENST00000612143 3047 ntBASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 LTF-203ENST00000426532 2494 ntTSL 2 BASIC14.66□□□□□ -0.06
TRAV1-1A0A0B4J248 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 GOLGA6L3-201ENST00000507199 1679 ntBASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 AF213884.3-201ENST00000563833 479 ntBASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 AP001094.4-201ENST00000579008 2176 ntBASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC14.65□□□□□ -0.06
TRAV1-1A0A0B4J248 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.07
TRAV1-1A0A0B4J248 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 GAS2L1P1-201ENST00000420145 1480 ntBASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 COX20-201ENST00000366528 568 ntTSL 2 BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 UBE2DNL-204ENST00000602536 740 ntBASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 BANP-227ENST00000626016 2144 ntTSL 2 BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 MTMR9LP-203ENST00000426597 1545 ntBASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 HLA-DQB1-201ENST00000374943 1656 ntBASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 NFYC-AS1-201ENST00000606277 1687 ntBASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC14.64□□□□□ -0.07
TRAV1-1A0A0B4J248 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
TRAV1-1A0A0B4J248 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
TRAV1-1A0A0B4J248 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms