Protein–RNA interactions for Protein: Q9JJV9

Scn5a, Sodium channel protein type 5 subunit alpha, mousemouse

Predictions only

Length 2,019 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn5aQ9JJV9 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Scn5aQ9JJV9 Gm14121-201ENSMUST00000121441 1380 ntBASIC24.49■■□□□ 1.51
Scn5aQ9JJV9 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Scn5aQ9JJV9 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Scn5aQ9JJV9 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC24.47■■□□□ 1.51
Scn5aQ9JJV9 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Scn5aQ9JJV9 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Scn5aQ9JJV9 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Scn5aQ9JJV9 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC24.45■■□□□ 1.51
Scn5aQ9JJV9 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
Scn5aQ9JJV9 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC24.45■■□□□ 1.51
Scn5aQ9JJV9 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
Scn5aQ9JJV9 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Scn5aQ9JJV9 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC24.45■■□□□ 1.5
Scn5aQ9JJV9 Gm5067-201ENSMUST00000170449 1009 ntBASIC24.45■■□□□ 1.5
Scn5aQ9JJV9 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
Scn5aQ9JJV9 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Scn5aQ9JJV9 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Scn5aQ9JJV9 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Scn5aQ9JJV9 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC24.44■■□□□ 1.5
Scn5aQ9JJV9 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC24.44■■□□□ 1.5
Scn5aQ9JJV9 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC24.44■■□□□ 1.5
Scn5aQ9JJV9 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Scn5aQ9JJV9 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Scn5aQ9JJV9 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
Scn5aQ9JJV9 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
Scn5aQ9JJV9 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Scn5aQ9JJV9 Terc-201ENSMUST00000082862 423 ntBASIC24.43■■□□□ 1.5
Scn5aQ9JJV9 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Scn5aQ9JJV9 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC24.42■■□□□ 1.5
Scn5aQ9JJV9 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
Scn5aQ9JJV9 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
Scn5aQ9JJV9 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
Scn5aQ9JJV9 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
Scn5aQ9JJV9 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
Scn5aQ9JJV9 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC24.4■■□□□ 1.5
Scn5aQ9JJV9 Gm5812-201ENSMUST00000061073 957 ntBASIC24.4■■□□□ 1.5
Scn5aQ9JJV9 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC24.4■■□□□ 1.5
Scn5aQ9JJV9 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Scn5aQ9JJV9 Gm6206-201ENSMUST00000133472 2199 ntBASIC24.37■■□□□ 1.49
Scn5aQ9JJV9 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC24.37■■□□□ 1.49
Scn5aQ9JJV9 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Scn5aQ9JJV9 Gm5921-201ENSMUST00000075898 882 ntBASIC24.37■■□□□ 1.49
Scn5aQ9JJV9 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Scn5aQ9JJV9 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
Scn5aQ9JJV9 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC24.35■■□□□ 1.49
Scn5aQ9JJV9 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Scn5aQ9JJV9 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Scn5aQ9JJV9 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC24.32■■□□□ 1.48
Scn5aQ9JJV9 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Scn5aQ9JJV9 AC153911.1-201ENSMUST00000220378 758 ntBASIC24.32■■□□□ 1.48
Scn5aQ9JJV9 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC24.31■■□□□ 1.48
Scn5aQ9JJV9 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Scn5aQ9JJV9 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
Scn5aQ9JJV9 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Scn5aQ9JJV9 Amer2-203ENSMUST00000225247 2662 ntBASIC24.31■■□□□ 1.48
Scn5aQ9JJV9 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Scn5aQ9JJV9 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC24.29■■□□□ 1.48
Scn5aQ9JJV9 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
Scn5aQ9JJV9 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Scn5aQ9JJV9 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
Scn5aQ9JJV9 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Scn5aQ9JJV9 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Scn5aQ9JJV9 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
Scn5aQ9JJV9 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
Scn5aQ9JJV9 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Scn5aQ9JJV9 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC24.27■■□□□ 1.48
Scn5aQ9JJV9 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Scn5aQ9JJV9 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Scn5aQ9JJV9 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC24.25■■□□□ 1.47
Scn5aQ9JJV9 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC24.25■■□□□ 1.47
Scn5aQ9JJV9 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Scn5aQ9JJV9 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
Scn5aQ9JJV9 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
Scn5aQ9JJV9 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Scn5aQ9JJV9 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Scn5aQ9JJV9 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Scn5aQ9JJV9 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Scn5aQ9JJV9 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Scn5aQ9JJV9 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC24.22■■□□□ 1.47
Scn5aQ9JJV9 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC24.22■■□□□ 1.47
Scn5aQ9JJV9 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Scn5aQ9JJV9 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC24.22■■□□□ 1.47
Scn5aQ9JJV9 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Scn5aQ9JJV9 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Scn5aQ9JJV9 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Scn5aQ9JJV9 Gm22567-201ENSMUST00000175542 342 ntBASIC24.2■■□□□ 1.47
Scn5aQ9JJV9 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Scn5aQ9JJV9 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Scn5aQ9JJV9 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
Scn5aQ9JJV9 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
Scn5aQ9JJV9 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
Scn5aQ9JJV9 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Scn5aQ9JJV9 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Scn5aQ9JJV9 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Scn5aQ9JJV9 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Scn5aQ9JJV9 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Scn5aQ9JJV9 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Scn5aQ9JJV9 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Scn5aQ9JJV9 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms