Protein–RNA interactions for Protein: Q9JI43

Rhox4b, Homeobox protein EHOX, mousemouse

Predictions only

Length 205 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rhox4bQ9JI43 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Rhox4bQ9JI43 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Rhox4bQ9JI43 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Rhox4bQ9JI43 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC18.41■□□□□ 0.54
Rhox4bQ9JI43 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Rhox4bQ9JI43 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Rhox4bQ9JI43 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
Rhox4bQ9JI43 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
Rhox4bQ9JI43 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Rhox4bQ9JI43 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Rhox4bQ9JI43 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC18.4■□□□□ 0.54
Rhox4bQ9JI43 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Rhox4bQ9JI43 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Rhox4bQ9JI43 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
Rhox4bQ9JI43 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Rhox4bQ9JI43 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Rhox4bQ9JI43 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rhox4bQ9JI43 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Rhox4bQ9JI43 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Rhox4bQ9JI43 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rhox4bQ9JI43 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Rhox4bQ9JI43 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rhox4bQ9JI43 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rhox4bQ9JI43 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rhox4bQ9JI43 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
Rhox4bQ9JI43 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rhox4bQ9JI43 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rhox4bQ9JI43 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC18.37■□□□□ 0.53
Rhox4bQ9JI43 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Rhox4bQ9JI43 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Rhox4bQ9JI43 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rhox4bQ9JI43 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rhox4bQ9JI43 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rhox4bQ9JI43 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rhox4bQ9JI43 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rhox4bQ9JI43 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rhox4bQ9JI43 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rhox4bQ9JI43 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Rhox4bQ9JI43 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rhox4bQ9JI43 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Rhox4bQ9JI43 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC18.34■□□□□ 0.53
Rhox4bQ9JI43 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rhox4bQ9JI43 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Rhox4bQ9JI43 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC18.33■□□□□ 0.52
Rhox4bQ9JI43 H3f3aos-201ENSMUST00000097448 2905 ntBASIC18.33■□□□□ 0.52
Rhox4bQ9JI43 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Rhox4bQ9JI43 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rhox4bQ9JI43 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rhox4bQ9JI43 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Rhox4bQ9JI43 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Rhox4bQ9JI43 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Rhox4bQ9JI43 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rhox4bQ9JI43 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rhox4bQ9JI43 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rhox4bQ9JI43 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Rhox4bQ9JI43 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC18.31■□□□□ 0.52
Rhox4bQ9JI43 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rhox4bQ9JI43 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC18.31■□□□□ 0.52
Rhox4bQ9JI43 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Rhox4bQ9JI43 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rhox4bQ9JI43 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Rhox4bQ9JI43 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rhox4bQ9JI43 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rhox4bQ9JI43 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rhox4bQ9JI43 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
Rhox4bQ9JI43 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rhox4bQ9JI43 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rhox4bQ9JI43 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Rhox4bQ9JI43 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rhox4bQ9JI43 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC18.29■□□□□ 0.52
Rhox4bQ9JI43 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Rhox4bQ9JI43 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Rhox4bQ9JI43 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rhox4bQ9JI43 Gm26115-201ENSMUST00000175605 87 ntBASIC18.28■□□□□ 0.52
Rhox4bQ9JI43 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC18.28■□□□□ 0.52
Rhox4bQ9JI43 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rhox4bQ9JI43 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Rhox4bQ9JI43 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Rhox4bQ9JI43 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rhox4bQ9JI43 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Rhox4bQ9JI43 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Rhox4bQ9JI43 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rhox4bQ9JI43 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC18.27■□□□□ 0.52
Rhox4bQ9JI43 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rhox4bQ9JI43 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Rhox4bQ9JI43 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Rhox4bQ9JI43 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Rhox4bQ9JI43 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Rhox4bQ9JI43 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Rhox4bQ9JI43 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Rhox4bQ9JI43 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rhox4bQ9JI43 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rhox4bQ9JI43 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Rhox4bQ9JI43 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC18.26■□□□□ 0.51
Rhox4bQ9JI43 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Rhox4bQ9JI43 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Rhox4bQ9JI43 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
Rhox4bQ9JI43 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rhox4bQ9JI43 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Rhox4bQ9JI43 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 12.2 ms