Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col6a6Q8C6K9 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Col6a6Q8C6K9 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Col6a6Q8C6K9 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC21.15■□□□□ 0.98
Col6a6Q8C6K9 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Col6a6Q8C6K9 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Col6a6Q8C6K9 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC21.13■□□□□ 0.97
Col6a6Q8C6K9 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col6a6Q8C6K9 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC21.13■□□□□ 0.97
Col6a6Q8C6K9 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col6a6Q8C6K9 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col6a6Q8C6K9 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col6a6Q8C6K9 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Col6a6Q8C6K9 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC21.12■□□□□ 0.97
Col6a6Q8C6K9 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC21.12■□□□□ 0.97
Col6a6Q8C6K9 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col6a6Q8C6K9 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col6a6Q8C6K9 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col6a6Q8C6K9 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col6a6Q8C6K9 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col6a6Q8C6K9 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC21.09■□□□□ 0.97
Col6a6Q8C6K9 Gm5522-201ENSMUST00000189483 1242 ntBASIC21.09■□□□□ 0.97
Col6a6Q8C6K9 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col6a6Q8C6K9 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Col6a6Q8C6K9 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Col6a6Q8C6K9 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC21.08■□□□□ 0.97
Col6a6Q8C6K9 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Col6a6Q8C6K9 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
Col6a6Q8C6K9 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC21.07■□□□□ 0.96
Col6a6Q8C6K9 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Col6a6Q8C6K9 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col6a6Q8C6K9 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC21.05■□□□□ 0.96
Col6a6Q8C6K9 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col6a6Q8C6K9 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col6a6Q8C6K9 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col6a6Q8C6K9 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
Col6a6Q8C6K9 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
Col6a6Q8C6K9 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Col6a6Q8C6K9 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col6a6Q8C6K9 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Col6a6Q8C6K9 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Col6a6Q8C6K9 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
Col6a6Q8C6K9 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col6a6Q8C6K9 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col6a6Q8C6K9 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Col6a6Q8C6K9 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC21.02■□□□□ 0.96
Col6a6Q8C6K9 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC21.02■□□□□ 0.96
Col6a6Q8C6K9 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
Col6a6Q8C6K9 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Col6a6Q8C6K9 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Col6a6Q8C6K9 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Col6a6Q8C6K9 Terc-201ENSMUST00000082862 423 ntBASIC21.01■□□□□ 0.95
Col6a6Q8C6K9 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC21■□□□□ 0.95
Col6a6Q8C6K9 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Col6a6Q8C6K9 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Col6a6Q8C6K9 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col6a6Q8C6K9 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Col6a6Q8C6K9 Gm14121-201ENSMUST00000121441 1380 ntBASIC20.99■□□□□ 0.95
Col6a6Q8C6K9 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col6a6Q8C6K9 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC20.98■□□□□ 0.95
Col6a6Q8C6K9 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Col6a6Q8C6K9 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Col6a6Q8C6K9 AC153911.1-201ENSMUST00000220378 758 ntBASIC20.97■□□□□ 0.95
Col6a6Q8C6K9 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col6a6Q8C6K9 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col6a6Q8C6K9 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col6a6Q8C6K9 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col6a6Q8C6K9 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Col6a6Q8C6K9 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC20.95■□□□□ 0.95
Col6a6Q8C6K9 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC20.95■□□□□ 0.95
Col6a6Q8C6K9 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC20.95■□□□□ 0.94
Col6a6Q8C6K9 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col6a6Q8C6K9 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Col6a6Q8C6K9 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC20.94■□□□□ 0.94
Col6a6Q8C6K9 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Col6a6Q8C6K9 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col6a6Q8C6K9 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col6a6Q8C6K9 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Col6a6Q8C6K9 AC093043.1-201ENSMUST00000226700 898 ntBASIC20.94■□□□□ 0.94
Col6a6Q8C6K9 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col6a6Q8C6K9 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col6a6Q8C6K9 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Col6a6Q8C6K9 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col6a6Q8C6K9 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Col6a6Q8C6K9 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.92■□□□□ 0.94
Col6a6Q8C6K9 Gm43566-201ENSMUST00000196851 808 ntBASIC20.92■□□□□ 0.94
Col6a6Q8C6K9 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col6a6Q8C6K9 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC20.91■□□□□ 0.94
Col6a6Q8C6K9 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC20.9■□□□□ 0.94
Col6a6Q8C6K9 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col6a6Q8C6K9 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC20.9■□□□□ 0.94
Col6a6Q8C6K9 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col6a6Q8C6K9 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Col6a6Q8C6K9 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col6a6Q8C6K9 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC20.88■□□□□ 0.93
Col6a6Q8C6K9 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col6a6Q8C6K9 Zxda-201ENSMUST00000117281 2621 ntBASIC20.88■□□□□ 0.93
Col6a6Q8C6K9 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC20.88■□□□□ 0.93
Col6a6Q8C6K9 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col6a6Q8C6K9 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 9.9 ms