Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Rfx3P48381 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Rfx3P48381 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Rfx3P48381 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Rfx3P48381 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Rfx3P48381 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC20.63■□□□□ 0.89
Rfx3P48381 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Rfx3P48381 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC20.62■□□□□ 0.89
Rfx3P48381 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Rfx3P48381 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rfx3P48381 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
Rfx3P48381 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Rfx3P48381 Gm42809-201ENSMUST00000198429 1138 ntBASIC20.6■□□□□ 0.89
Rfx3P48381 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Rfx3P48381 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Rfx3P48381 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Rfx3P48381 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Rfx3P48381 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Rfx3P48381 Gm37847-201ENSMUST00000192163 1497 ntBASIC20.58■□□□□ 0.89
Rfx3P48381 Gm31748-201ENSMUST00000194938 1497 ntBASIC20.58■□□□□ 0.89
Rfx3P48381 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC20.58■□□□□ 0.89
Rfx3P48381 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC20.58■□□□□ 0.89
Rfx3P48381 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC20.58■□□□□ 0.88
Rfx3P48381 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Rfx3P48381 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Rfx3P48381 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Rfx3P48381 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Rfx3P48381 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Rfx3P48381 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Rfx3P48381 Gm9939-201ENSMUST00000067161 1154 ntBASIC20.56■□□□□ 0.88
Rfx3P48381 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC20.56■□□□□ 0.88
Rfx3P48381 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rfx3P48381 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Rfx3P48381 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Rfx3P48381 Particl-201ENSMUST00000205370 1560 ntBASIC20.55■□□□□ 0.88
Rfx3P48381 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Rfx3P48381 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC20.54■□□□□ 0.88
Rfx3P48381 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC20.54■□□□□ 0.88
Rfx3P48381 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rfx3P48381 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rfx3P48381 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Rfx3P48381 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC20.53■□□□□ 0.88
Rfx3P48381 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Rfx3P48381 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Rfx3P48381 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Rfx3P48381 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Rfx3P48381 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Rfx3P48381 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rfx3P48381 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Rfx3P48381 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rfx3P48381 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
Rfx3P48381 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Rfx3P48381 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Rfx3P48381 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Rfx3P48381 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Rfx3P48381 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Rfx3P48381 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rfx3P48381 Gm6821-201ENSMUST00000107540 542 ntBASIC20.48■□□□□ 0.87
Rfx3P48381 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC20.48■□□□□ 0.87
Rfx3P48381 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Rfx3P48381 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rfx3P48381 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rfx3P48381 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Rfx3P48381 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
Rfx3P48381 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rfx3P48381 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rfx3P48381 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rfx3P48381 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rfx3P48381 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rfx3P48381 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC20.46■□□□□ 0.87
Rfx3P48381 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rfx3P48381 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC20.46■□□□□ 0.87
Rfx3P48381 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Rfx3P48381 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rfx3P48381 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rfx3P48381 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Rfx3P48381 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rfx3P48381 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Rfx3P48381 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Rfx3P48381 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Rfx3P48381 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Rfx3P48381 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Rfx3P48381 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC20.44■□□□□ 0.86
Rfx3P48381 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Rfx3P48381 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Rfx3P48381 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Rfx3P48381 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rfx3P48381 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Rfx3P48381 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rfx3P48381 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC20.42■□□□□ 0.86
Rfx3P48381 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Rfx3P48381 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rfx3P48381 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Rfx3P48381 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Rfx3P48381 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rfx3P48381 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rfx3P48381 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rfx3P48381 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rfx3P48381 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Rfx3P48381 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC20.4■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 15.4 ms