Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav6-1A0A075B5Z8 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav6-1A0A075B5Z8 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC18.48■□□□□ 0.55
Trav6-1A0A075B5Z8 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Trav6-1A0A075B5Z8 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
Trav6-1A0A075B5Z8 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav6-1A0A075B5Z8 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav6-1A0A075B5Z8 Gm14121-201ENSMUST00000121441 1380 ntBASIC18.46■□□□□ 0.55
Trav6-1A0A075B5Z8 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Trav6-1A0A075B5Z8 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav6-1A0A075B5Z8 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Trav6-1A0A075B5Z8 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Trav6-1A0A075B5Z8 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
Trav6-1A0A075B5Z8 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav6-1A0A075B5Z8 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav6-1A0A075B5Z8 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav6-1A0A075B5Z8 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav6-1A0A075B5Z8 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav6-1A0A075B5Z8 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC18.44■□□□□ 0.54
Trav6-1A0A075B5Z8 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Trav6-1A0A075B5Z8 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Trav6-1A0A075B5Z8 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav6-1A0A075B5Z8 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Trav6-1A0A075B5Z8 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trav6-1A0A075B5Z8 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Trav6-1A0A075B5Z8 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav6-1A0A075B5Z8 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC18.42■□□□□ 0.54
Trav6-1A0A075B5Z8 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav6-1A0A075B5Z8 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav6-1A0A075B5Z8 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav6-1A0A075B5Z8 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Trav6-1A0A075B5Z8 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav6-1A0A075B5Z8 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav6-1A0A075B5Z8 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Trav6-1A0A075B5Z8 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav6-1A0A075B5Z8 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Trav6-1A0A075B5Z8 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav6-1A0A075B5Z8 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Trav6-1A0A075B5Z8 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav6-1A0A075B5Z8 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trav6-1A0A075B5Z8 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trav6-1A0A075B5Z8 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trav6-1A0A075B5Z8 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trav6-1A0A075B5Z8 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Trav6-1A0A075B5Z8 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trav6-1A0A075B5Z8 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Trav6-1A0A075B5Z8 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
Trav6-1A0A075B5Z8 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.54
Trav6-1A0A075B5Z8 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Trav6-1A0A075B5Z8 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Trav6-1A0A075B5Z8 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav6-1A0A075B5Z8 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav6-1A0A075B5Z8 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Trav6-1A0A075B5Z8 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
Trav6-1A0A075B5Z8 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC18.39■□□□□ 0.53
Trav6-1A0A075B5Z8 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav6-1A0A075B5Z8 Tdp2-203ENSMUST00000223804 1136 ntBASIC18.38■□□□□ 0.53
Trav6-1A0A075B5Z8 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trav6-1A0A075B5Z8 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trav6-1A0A075B5Z8 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Trav6-1A0A075B5Z8 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav6-1A0A075B5Z8 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trav6-1A0A075B5Z8 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav6-1A0A075B5Z8 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav6-1A0A075B5Z8 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trav6-1A0A075B5Z8 Gm4419-202ENSMUST00000226239 1431 ntBASIC18.37■□□□□ 0.53
Trav6-1A0A075B5Z8 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav6-1A0A075B5Z8 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trav6-1A0A075B5Z8 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Trav6-1A0A075B5Z8 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav6-1A0A075B5Z8 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav6-1A0A075B5Z8 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trav6-1A0A075B5Z8 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav6-1A0A075B5Z8 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav6-1A0A075B5Z8 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav6-1A0A075B5Z8 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav6-1A0A075B5Z8 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC18.34■□□□□ 0.53
Trav6-1A0A075B5Z8 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC18.34■□□□□ 0.53
Trav6-1A0A075B5Z8 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trav6-1A0A075B5Z8 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trav6-1A0A075B5Z8 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trav6-1A0A075B5Z8 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Trav6-1A0A075B5Z8 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
Trav6-1A0A075B5Z8 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav6-1A0A075B5Z8 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav6-1A0A075B5Z8 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav6-1A0A075B5Z8 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav6-1A0A075B5Z8 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trav6-1A0A075B5Z8 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Trav6-1A0A075B5Z8 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Trav6-1A0A075B5Z8 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav6-1A0A075B5Z8 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trav6-1A0A075B5Z8 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav6-1A0A075B5Z8 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav6-1A0A075B5Z8 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC18.3■□□□□ 0.52
Trav6-1A0A075B5Z8 H3f3aos-201ENSMUST00000097448 2905 ntBASIC18.29■□□□□ 0.52
Trav6-1A0A075B5Z8 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav6-1A0A075B5Z8 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav6-1A0A075B5Z8 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav6-1A0A075B5Z8 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms