RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 IFNA21P01568 189 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 FGBP02675 491 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 CEBPGP53567 150 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 MLLT6P55198 1093 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 PSMA6P60900 246 aaKnown RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 OSTNP61366 133 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 KCNJ11Q14654 390 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 TCEA2Q15560 299 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 SLC36A3Q495N2 470 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 EIPR1Q53HC9 387 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 RPL13AP3Q6NVV1 102 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 BPHLQ86WA6 291 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 TNS4Q8IZW8 715 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 KCT2Q8NC54 265 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 B3GALNT2Q8NCR0 500 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ZFAND1Q8TCF1 268 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 REEP4Q9H6H4 257 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 SMOXQ9NWM0 555 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 KLQ9UEF7 1012 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 EBF1Q9UH73 591 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 CA5BQ9Y2D0 317 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 TEX264Q9Y6I9 313 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 H3BM21 787 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 VILLO15195 856 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 BCAS1O75363 584 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 GABARAPO95166 117 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 RAB36O95755 333 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 C1QBP02746 253 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 CSN2P05814 226 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 PRDX5P30044 214 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ZSWIM9Q86XI8 627 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 GID4Q8IVV7 300 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 PSD4Q8NDX1 1056 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 CHDHQ8NE62 594 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 C3orf49Q96BT1 292 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 CNPPD1Q9BV87 410 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 MEAF6Q9HAF1 191 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 SALL4Q9UJQ4 1053 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ENTPD4Q9Y227 616 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 MRC1P22897 1456 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ZBTB14O43829 449 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 F10P00742 488 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 DNTTP04053 509 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 SLC2A5P22732 501 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 HSPA7P48741 367 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 KCNC4Q03721 635 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ANKRD54Q6NXT1 300 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF675Q8TD23 568 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ANKRD49Q8WVL7 239 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 QRSL1Q9H0R6 528 aaKnown RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 FBXO44Q9H4M3 255 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 WASH6PQ9NQA3 447 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 MAN1C1Q9NR34 630 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 TSPAN16Q9UKR8 245 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 RUVBL1Q9Y265 456 aaKnown RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 DUOX1Q9NRD9 1551 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 MAGEB17A8MXT2 336 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 H7C1Q1 480 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ATP5C1P36542 298 aaKnown RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 SMSP52788 366 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 POU6F1Q14863 301 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 TCEAL5Q5H9L2 206 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 AVPI1Q5T686 147 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 SSX9Q7RTT3 188 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 MS4A15Q8N5U1 240 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 CLDN22Q8N7P3 220 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 TMEM159Q96B96 161 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF408Q9H9D4 720 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 SEMA4BQ9NPR2 832 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 DPP3Q9NY33 737 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 PACSIN3Q9UKS6 424 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 PNMA8BQ9ULN7 279 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 FKBP7Q9Y680 259 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 PRR36Q9H6K5 1346 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 SMIM22K7EJ46 135 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 SHOXO15266 292 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ITGB1P05556 798 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 FCER2P06734 321 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 RPL38P63173 70 aaKnown RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 NFIXQ14938 502 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 CRTC2Q53ET0 693 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 KIAA1161Q6NSJ0 714 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 FAM122BQ7Z309 247 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 SAPCD2Q86UD0 394 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 Q8N402 240 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 ACOT13Q9NPJ3 140 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 DTLQ9NZJ0 730 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 PCDH10Q9P2E7 1040 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 PRELID3BQ9Y3B1 194 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 PLIN4Q96Q06 1357 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 A0A0D9SG52 128 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 MEIOCA2RUB1 952 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 LRRC72A6NJI9 287 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 STMND1H3BQB6 276 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 FPGTO14772 594 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 SLC25A27O95847 323 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 NR0B1P51843 470 aaKnown RBP4.58□□□□□ -1.68
SCN1A-220ENST00000641603 PPP3CAQ08209 521 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 USP41Q3LFD5 358 aa4.58□□□□□ -1.68
SCN1A-220ENST00000641603 RFPL4BQ6ZWI9 263 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms