RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 KITLGP21583 273 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TNFRSF4P43489 277 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 GPX6P59796 221 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PPP2CAP67775 309 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 GNA12Q03113 381 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 GBX1Q14549 363 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 IQCCQ4KMZ1 466 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 COBLL1Q53SF7 1204 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PM20D1Q6GTS8 502 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF793Q6ZN11 406 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 FAM83HQ6ZRV2 1179 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 NRROSQ86YC3 692 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SERPINA12Q8IW75 414 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ADHFE1Q8IWW8 467 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CMIPQ8IY22 773 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CCDC116Q8IYX3 515 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PYDC1Q8WXC3 89 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ASB15Q8WXK1 588 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ZUFSPQ96AP4 578 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 DPH3Q96FX2 82 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 JMJD8Q96S16 334 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 C11orf70Q9BRQ4 267 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PLEKHA2Q9HB19 425 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 GLOD4Q9HC38 313 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 UCKL1Q9NWZ5 548 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 GRID1Q9ULK0 1009 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ST3GAL5Q9UNP4 418 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 WIF1Q9Y5W5 379 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 FKBP7Q9Y680 259 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 KCNE2Q9Y6J6 123 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 DUSP10Q9Y6W6 482 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CDC42BPAQ5VT25 1732 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 C2orf92A0A1B0GVN3 265 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CRYM-AS1A6NIL9 109 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 GMFGO60234 142 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PRKD3O94806 890 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SLC16A8O95907 504 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CLEC3BP05452 202 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 NUDT7P0C024 238 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CHRNB1P11230 501 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF823P16415 610 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 GEMP55040 296 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CDC42P60953 191 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PSPHP78330 225 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 RPL6Q02878 288 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 DUSP4Q13115 394 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 AGKQ53H12 422 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ADGRF3Q8IZF5 1079 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 UBR7Q8N806 425 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CAMKVQ8NCB2 501 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ADAM32Q8TC27 787 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 C2orf15Q8WU43 125 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 MTMR8Q96EF0 704 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 RRNAD1Q96FB5 475 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 FCRL2Q96LA5 508 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PHF12Q96QT6 1004 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 FERD3LQ96RJ6 166 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CDC6Q99741 560 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 POLR1EQ9GZS1 481 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CDT1Q9H211 546 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 RNPEPL1Q9HAU8 725 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CLK4Q9HAZ1 481 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 GOLGA2P5Q9HBQ8 144 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ANKHQ9HCJ1 492 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 C19orf12Q9NSK7 152 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ACAD8Q9UKU7 415 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 RIMKLBQ9ULI2 386 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SSR3Q9UNL2 185 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ABCA6Q8N139 1617 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 KLRG2A4D1S0 409 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ANXA2P2A6NMY6 339 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TRAFD1O14545 582 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SERPINB7O75635 380 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 STK17BO94768 372 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ELFN1P0C7U0 828 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 EPHB2P29323 1055 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 FRG1Q14331 258 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 HERC3Q15034 1050 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SLC1A5Q15758 541 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 NEPROQ6NW34 567 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 FAM131AQ6UXB0 335 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 REXO1L1PQ8IX06 675 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM132CQ8N3T6 1108 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SLC25A41Q8N5S1 370 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF548Q8NEK5 533 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 OR9A2Q8NGT5 310 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TAS1R2Q8TE23 839 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TCTEX1D2Q8WW35 142 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PIH1D2Q8WWB5 315 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ZDHHC16Q969W1 377 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TRIM43Q96BQ3 446 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SEPSECSQ9HD40 501 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TBCCD1Q9NVR7 557 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 GTF2IRD1Q9UHL9 959 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 AGO2Q9UKV8 859 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SLC5A6Q9Y289 635 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 GRIP1Q9Y3R0 1128 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 LYVE1Q9Y5Y7 322 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CLIC4Q9Y696 253 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 NEO1Q92859 1461 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms