RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 B3GAT1Q9P2W7 334 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 PPP1R3CQ9UQK1 317 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 PPP2R2CQ9Y2T4 447 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 ARID2Q68CP9 1835 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 A0A1W2PNU3 283 aaPredicted RBP3.41□□□□□ -1.86
CD44-239ENST00000639002 MPTX1A8MV57 137 aa3.41□□□□□ -1.86
CD44-239ENST00000639002 ACSL1P33121 698 aa3.41□□□□□ -1.86
CD44-239ENST00000639002 TPD52P55327 224 aaPredicted RBP3.41□□□□□ -1.86
CD44-239ENST00000639002 PAX9P55771 341 aa3.41□□□□□ -1.86
CD44-239ENST00000639002 HUNKP57058 714 aa3.41□□□□□ -1.86
CD44-239ENST00000639002 TMF1P82094 1093 aa3.41□□□□□ -1.86
CD44-239ENST00000639002 LY6DQ14210 128 aa3.41□□□□□ -1.86
CD44-239ENST00000639002 KRT33BQ14525 404 aa3.41□□□□□ -1.86
CD44-239ENST00000639002 WLSQ5T9L3 541 aa3.41□□□□□ -1.86
CD44-239ENST00000639002 LCE3AQ5TA76 89 aa3.41□□□□□ -1.86
CD44-239ENST00000639002 RSRC2Q7L4I2 434 aaKnown RBP3.41□□□□□ -1.86
CD44-239ENST00000639002 EID3Q8N140 333 aa3.41□□□□□ -1.86
CD44-239ENST00000639002 PAPD5Q8NDF8 572 aaKnown RBP3.41□□□□□ -1.86
CD44-239ENST00000639002 NPEPL1Q8NDH3 523 aa3.41□□□□□ -1.86
CD44-239ENST00000639002 SMAP2Q8WU79 429 aaPredicted RBP3.41□□□□□ -1.86
CD44-239ENST00000639002 ARHGAP45Q92619 1136 aa3.41□□□□□ -1.86
CD44-239ENST00000639002 C10orf90Q96M02 699 aa3.41□□□□□ -1.86
CD44-239ENST00000639002 LMF2Q9BU23 707 aaKnown RBP3.41□□□□□ -1.86
CD44-239ENST00000639002 NUP85Q9BW27 656 aa3.41□□□□□ -1.86
CD44-239ENST00000639002 DGCR6LQ9BY27 220 aa3.41□□□□□ -1.86
CD44-239ENST00000639002 WSB2Q9NYS7 404 aaPredicted RBP3.41□□□□□ -1.86
CD44-239ENST00000639002 CACNG4Q9UBN1 327 aa3.41□□□□□ -1.86
CD44-239ENST00000639002 SEC63Q9UGP8 760 aaKnown RBP3.41□□□□□ -1.86
CD44-239ENST00000639002 DAPK2Q9UIK4 370 aa3.41□□□□□ -1.86
CD44-239ENST00000639002 GRID1Q9ULK0 1009 aa3.41□□□□□ -1.86
CD44-239ENST00000639002 ABCA7Q8IZY2 2146 aa3.41□□□□□ -1.86
CD44-239ENST00000639002 PI4KAP2A4QPH2 592 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 PGPEP1LA6NFU8 196 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 ANKRD61A6NGH8 418 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 IDH3BO43837 385 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 MAGEC1O60732 1142 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 DDHD2O94830 711 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 ACADMP11310 421 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 CCR10P46092 362 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 MAZP56270 477 aaKnown RBP3.4□□□□□ -1.87
CD44-239ENST00000639002 CDK3Q00526 305 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 GCNT1Q02742 428 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 C20orf194Q5TEA3 1177 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 TMEM207Q6UWW9 146 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 HAUS6Q7Z4H7 955 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 RTN4RL2Q86UN3 420 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 TTC39CQ8N584 583 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 NIPA2Q8N8Q9 360 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.4□□□□□ -1.87
CD44-239ENST00000639002 Q8NBF4 154 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 OR11H4Q8NGC9 324 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 OR52N5Q8NH56 324 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 PRICKLE1Q96MT3 831 aaPredicted RBP3.4□□□□□ -1.87
CD44-239ENST00000639002 PSMD1Q99460 953 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 FNDC11Q9BVV2 318 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 KRTAP4-3Q9BYR4 195 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 TRIM6Q9C030 488 aaPredicted RBP3.4□□□□□ -1.87
CD44-239ENST00000639002 OR2B2Q9GZK3 357 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 SPATC1LQ9H0A9 340 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 MAN2C1Q9NTJ4 1040 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 P4HTMQ9NXG6 502 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 TP53TG3Q9ULZ0 132 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 PCDH11YQ9BZA8 1340 aa3.4□□□□□ -1.87
CD44-239ENST00000639002 LRRC72A6NJI9 287 aa3.39□□□□□ -1.87
CD44-239ENST00000639002 SRRM5B3KS81 715 aa3.39□□□□□ -1.87
CD44-239ENST00000639002 PTP4A3O75365 173 aa3.39□□□□□ -1.87
CD44-239ENST00000639002 MED24O75448 989 aa3.39□□□□□ -1.87
CD44-239ENST00000639002 ZWINTO95229 277 aa3.39□□□□□ -1.87
CD44-239ENST00000639002 KRTAP1-4P0C5Y4 121 aa3.39□□□□□ -1.87
CD44-239ENST00000639002 DNAH10OSP0CZ25 163 aa3.39□□□□□ -1.87
CD44-239ENST00000639002 PGFP49763 221 aa3.39□□□□□ -1.87
CD44-239ENST00000639002 PDX1P52945 283 aa3.39□□□□□ -1.87
CD44-239ENST00000639002 HERC3Q15034 1050 aa3.39□□□□□ -1.87
CD44-239ENST00000639002 VANGL1Q8TAA9 524 aaPredicted RBP3.39□□□□□ -1.87
CD44-239ENST00000639002 ZNF486Q96H40 463 aaPredicted RBP3.39□□□□□ -1.87
CD44-239ENST00000639002 ZNF414Q96IQ9 312 aa3.39□□□□□ -1.87
CD44-239ENST00000639002 NEK1Q96PY6 1258 aa3.39□□□□□ -1.87
CD44-239ENST00000639002 RAB11FIP5Q9BXF6 653 aa3.39□□□□□ -1.87
CD44-239ENST00000639002 THAP2Q9H0W7 228 aa3.39□□□□□ -1.87
CD44-239ENST00000639002 SPHK2Q9NRA0 654 aa3.39□□□□□ -1.87
CD44-239ENST00000639002 A0A1W2PR80 420 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 OR2A25A4D2G3 310 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 TMEM221A6NGB7 291 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 F5H0A9 414 aaPredicted RBP3.38□□□□□ -1.87
CD44-239ENST00000639002 MBD4O95243 580 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 HSPA8P11142 646 aaKnown RBP3.38□□□□□ -1.87
CD44-239ENST00000639002 MFAP4P55083 255 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 DCAF7P61962 342 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 CSNK2BP67870 215 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 SIRPAP78324 504 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 MS4A2Q01362 244 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 PAX8Q06710 450 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 TAF10Q12962 218 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 NR1D2Q14995 579 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 FASTKD3Q14CZ7 662 aaKnown RBP3.38□□□□□ -1.87
CD44-239ENST00000639002 TNIP1Q15025 636 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 TEX38Q6PEX7 206 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 TMPRSS11FQ6ZWK6 438 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 ADIPOR2Q86V24 386 aa3.38□□□□□ -1.87
CD44-239ENST00000639002 CEP57Q86XR8 500 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms