RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	TMEFF1	Q8IYR6	380 aa		11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	OR5AR1	Q8NGP9	310 aa		11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	OR56A3	Q8NH54	315 aa		11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	OR5K2	Q8NHB8	316 aa		11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	C1orf216	Q8TAB5	229 aa		11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	GPBAR1	Q8TDU6	330 aa		11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	STON2	Q8WXE9	905 aa		11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	ATP6V1E2	Q96A05	226 aa		11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	C12orf66	Q96MD2	445 aa		11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	FERD3L	Q96RJ6	166 aa		11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	INSM2	Q96T92	566 aa	Predicted RBP	11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	TMEM168	Q9H0V1	697 aa		11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	MVB12B	Q9H7P6	319 aa		11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	NOL11	Q9H8H0	719 aa	Known RBP	11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	IPPK	Q9H8X2	491 aa		11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	TM9SF3	Q9HD45	589 aa		11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	DNAJC11	Q9NVH1	559 aa		11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	POLG2	Q9UHN1	485 aa		11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	PCOLCE2	Q9UKZ9	415 aa		11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	PNMA8B	Q9ULN7	279 aa	Predicted RBP	11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	WDR37	Q9Y2I8	494 aa		11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	ST14	Q9Y5Y6	855 aa		11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	HEBP2	Q9Y5Z4	205 aa		11.45	□□□□□ -0.58
CLN6-223	ENST00000637823	PI4KA	P42356	2102 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	PDZK1P1	A8MUH7	402 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	TLR4	O00206	839 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	OR7A17	O14581	309 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	AZIN1	O14977	448 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	KATNA1	O75449	491 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	DCTN3	O75935	186 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	WDR47	O94967	919 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	SLC16A8	O95907	504 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	WNT1	P04628	370 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	UROS	P10746	265 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	MAOB	P27338	520 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	HAL	P42357	657 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	IDH3A	P50213	366 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	CCNG1	P51959	295 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	ILF3	Q12906	894 aa	Known RBP eCLIP	11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	CDC16	Q13042	620 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	ARHGAP19	Q14CB8	494 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	CLCA4	Q14CN2	919 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	RPE65	Q16518	533 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	ZXDC	Q2QGD7	858 aa	Predicted RBP	11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	UGT3A2	Q3SY77	523 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	EFL1	Q7Z2Z2	1120 aa	Known RBP	11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	MILR1	Q7Z6M3	343 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	SYVN1	Q86TM6	617 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	PARG	Q86W56	976 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	RGL4	Q8IZJ4	473 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	CHCHD4	Q8N4Q1	142 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	SNX31	Q8N9S9	440 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	DTWD2	Q8NBA8	298 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	AGR3	Q8TD06	166 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	SETD7	Q8WTS6	366 aa	Known RBP	11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	CAMK1G	Q96NX5	476 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	NTMT1	Q9BV86	223 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	NUSAP1	Q9BXS6	441 aa	Known RBP	11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	GSDMC	Q9BYG8	508 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	ATG10	Q9H0Y0	220 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	MIR1-1HG	Q9H1L0	117 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	TNFRSF12A	Q9NP84	129 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	PFDN4	Q9NQP4	134 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	PRDM8	Q9NQV8	689 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	HEY2	Q9UBP5	337 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	LNPEP	Q9UIQ6	1025 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	FBXO4	Q9UKT5	387 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	SLCO1B1	Q9Y6L6	691 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	COLEC10	Q9Y6Z7	277 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	KNL1	Q8NG31	2342 aa		11.44	□□□□□ -0.58
CLN6-223	ENST00000637823	ZNF839	A8K0R7	811 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	TMEM233	B4DJY2	109 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	SCAMP1	O15126	338 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	KDM1A	O60341	852 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	CRCP	O75575	148 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	ENO1	P06733	434 aa	Known RBP	11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	EBLN1	P0CF75	366 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	CTSE	P14091	401 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	CCND1	P24385	295 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	AK4	P27144	223 aa	Predicted RBP	11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	NDUFS1	P28331	727 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	IMPA1	P29218	277 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	ACTR1B	P42025	376 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	PNLIPRP1	P54315	467 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	ERVPABLB-1	P60509	514 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	ACTR1A	P61163	376 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	PCDH1	Q08174	1060 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	NAE1	Q13564	534 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	GRB7	Q14451	532 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	KRT33B	Q14525	404 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	ZSCAN26	Q16670	478 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	KANK2	Q63ZY3	851 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	C6orf89	Q6UWU4	347 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	MAVS	Q7Z434	540 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	THOC6	Q86W42	341 aa	Known RBP	11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	NRROS	Q86YC3	692 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	PHACTR4	Q8IZ21	702 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	MAML2	Q8IZL2	1156 aa	Predicted RBP	11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	TMEM105	Q8N8V8	129 aa		11.43	□□□□□ -0.58
CLN6-223	ENST00000637823	CCL4L1	Q8NHW4	92 aa		11.43	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms