RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 PADI1Q9ULC6 663 aa18.63■□□□□ 0.57
CLN3-260ENST00000637578 PCDHGA6Q9Y5G7 932 aa18.63■□□□□ 0.57
CLN3-260ENST00000637578 CFAP46Q8IYW2 2715 aa18.62■□□□□ 0.57
CLN3-260ENST00000637578 NDC80O14777 642 aa18.62■□□□□ 0.57
CLN3-260ENST00000637578 KPNA5O15131 536 aa18.62■□□□□ 0.57
CLN3-260ENST00000637578 NKX2-8O15522 239 aa18.62■□□□□ 0.57
CLN3-260ENST00000637578 ST6GAL1P15907 406 aa18.62■□□□□ 0.57
CLN3-260ENST00000637578 MSS51Q4VC12 460 aa18.62■□□□□ 0.57
CLN3-260ENST00000637578 GLE1Q53GS7 698 aaKnown RBP18.62■□□□□ 0.57
CLN3-260ENST00000637578 CTSL3PQ5NE16 218 aa18.62■□□□□ 0.57
CLN3-260ENST00000637578 RNF187Q5TA31 235 aaPredicted RBP18.62■□□□□ 0.57
CLN3-260ENST00000637578 UNC5DQ6UXZ4 953 aa18.62■□□□□ 0.57
CLN3-260ENST00000637578 SDCCAG8Q86SQ7 713 aaPredicted RBP18.62■□□□□ 0.57
CLN3-260ENST00000637578 SEC14L1Q92503 715 aa18.62■□□□□ 0.57
CLN3-260ENST00000637578 RNF31Q96EP0 1072 aa18.62■□□□□ 0.57
CLN3-260ENST00000637578 MENTQ9BUN1 341 aa18.62■□□□□ 0.57
CLN3-260ENST00000637578 CHRNA10Q9GZZ6 450 aa18.62■□□□□ 0.57
CLN3-260ENST00000637578 LHX9Q9NQ69 397 aa18.62■□□□□ 0.57
CLN3-260ENST00000637578 CROTQ9UKG9 612 aa18.62■□□□□ 0.57
CLN3-260ENST00000637578 PIEZO2Q9H5I5 2752 aa18.61■□□□□ 0.57
CLN3-260ENST00000637578 PIPSLA2A3N6 862 aa18.61■□□□□ 0.57
CLN3-260ENST00000637578 GOLGA8KD6RF30 607 aa18.61■□□□□ 0.57
CLN3-260ENST00000637578 GOLGA8TH3BQL2 631 aa18.61■□□□□ 0.57
CLN3-260ENST00000637578 BANF1O75531 89 aa18.61■□□□□ 0.57
CLN3-260ENST00000637578 CHRM5P08912 532 aaPredicted RBP18.61■□□□□ 0.57
CLN3-260ENST00000637578 CCNYL3P0C7X3 344 aa18.61■□□□□ 0.57
CLN3-260ENST00000637578 OGNP20774 298 aaKnown RBP18.61■□□□□ 0.57
CLN3-260ENST00000637578 CSE1LP55060 971 aaKnown RBP18.61■□□□□ 0.57
CLN3-260ENST00000637578 GRB7Q14451 532 aa18.61■□□□□ 0.57
CLN3-260ENST00000637578 KYNUQ16719 465 aa18.61■□□□□ 0.57
CLN3-260ENST00000637578 ANKRD20A4Q4UJ75 823 aa18.61■□□□□ 0.57
CLN3-260ENST00000637578 CASC4Q6P4E1 433 aa18.61■□□□□ 0.57
CLN3-260ENST00000637578 ZNF517Q6ZMY9 492 aaPredicted RBP18.61■□□□□ 0.57
CLN3-260ENST00000637578 STARD8Q92502 1023 aa18.61■□□□□ 0.57
CLN3-260ENST00000637578 SIGLEC10Q96LC7 697 aa18.61■□□□□ 0.57
CLN3-260ENST00000637578 CATSPER2Q96P56 530 aa18.61■□□□□ 0.57
CLN3-260ENST00000637578 TRIM56Q9BRZ2 755 aaKnown RBP18.61■□□□□ 0.57
CLN3-260ENST00000637578 SOHLH2Q9NX45 425 aa18.61■□□□□ 0.57
CLN3-260ENST00000637578 SPHK1Q9NYA1 384 aa18.61■□□□□ 0.57
CLN3-260ENST00000637578 TDRKHQ9Y2W6 561 aaKnown RBP18.61■□□□□ 0.57
CLN3-260ENST00000637578 PCDHB3Q9Y5E6 796 aa18.61■□□□□ 0.57
CLN3-260ENST00000637578 COL6A6A6NMZ7 2263 aa18.61■□□□□ 0.57
CLN3-260ENST00000637578 ZCWPW2A0A1B0GU75 182 aa18.6■□□□□ 0.57
CLN3-260ENST00000637578 KDM1AO60341 852 aa18.6■□□□□ 0.57
CLN3-260ENST00000637578 UGT2B7P16662 529 aa18.6■□□□□ 0.57
CLN3-260ENST00000637578 PAMP19021 973 aa18.6■□□□□ 0.57
CLN3-260ENST00000637578 DLSTP36957 453 aa18.6■□□□□ 0.57
CLN3-260ENST00000637578 MC1RQ01726 317 aa18.6■□□□□ 0.57
CLN3-260ENST00000637578 GBX1Q14549 363 aa18.6■□□□□ 0.57
CLN3-260ENST00000637578 TMED2Q15363 201 aa18.6■□□□□ 0.57
CLN3-260ENST00000637578 HIF1AQ16665 826 aa18.6■□□□□ 0.57
CLN3-260ENST00000637578 BBS9Q3SYG4 887 aa18.6■□□□□ 0.57
CLN3-260ENST00000637578 ZNF789Q5FWF6 425 aa18.6■□□□□ 0.57
CLN3-260ENST00000637578 NEPROQ6NW34 567 aa18.6■□□□□ 0.57
CLN3-260ENST00000637578 CENPUQ71F23 418 aa18.6■□□□□ 0.57
CLN3-260ENST00000637578 CILP2Q8IUL8 1156 aa18.6■□□□□ 0.57
CLN3-260ENST00000637578 PDIK1LQ8N165 341 aa18.6■□□□□ 0.57
CLN3-260ENST00000637578 SLC38A9Q8NBW4 561 aa18.6■□□□□ 0.57
CLN3-260ENST00000637578 LRFN5Q96NI6 719 aa18.6■□□□□ 0.57
CLN3-260ENST00000637578 SAMD15Q9P1V8 674 aa18.6■□□□□ 0.57
CLN3-260ENST00000637578 MAD1L1Q9Y6D9 718 aa18.6■□□□□ 0.57
CLN3-260ENST00000637578 CPNE3O75131 537 aaKnown RBP18.59■□□□□ 0.57
CLN3-260ENST00000637578 RECKO95980 971 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 ESR1P03372 595 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 NTRK1P04629 796 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 PVRP15151 417 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 PKLRP30613 574 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 PLTPP55058 493 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 EIF3BP55884 814 aaKnown RBP18.59■□□□□ 0.57
CLN3-260ENST00000637578 ARL4CP56559 192 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 DHX9Q08211 1270 aaKnown RBP18.59■□□□□ 0.57
CLN3-260ENST00000637578 CDC20Q12834 499 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 ABRQ12979 859 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 KIR2DS3Q14952 304 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 PLEKHS1Q5SXH7 462 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 BORAQ6PGQ7 559 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 ZDHHC24Q6UX98 284 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 DCUN1D3Q8IWE4 304 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 AKIRIN1Q9H9L7 192 aaPredicted RBP18.59■□□□□ 0.57
CLN3-260ENST00000637578 KCND3Q9UK17 655 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 MRPS18BQ9Y676 258 aaKnown RBP18.59■□□□□ 0.57
CLN3-260ENST00000637578 C21orf140B9A014 251 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 H3BMM5 538 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 PFDN6O15212 129 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 SCRG1O75711 98 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 RPN2P04844 631 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 FAM87AP0C7U9 286 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 PEBP1P30086 187 aaKnown RBP18.59■□□□□ 0.57
CLN3-260ENST00000637578 FMO4P31512 558 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 RAB28P51157 221 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 ZIC1Q15915 447 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 CDHR3Q6ZTQ4 885 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 OTOAQ7RTW8 1153 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 TMEM126BQ8IUX1 230 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 OTUD6BQ8N6M0 293 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 OR1L3Q8NH93 324 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 FBXO25Q8TCJ0 367 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 ARHGAP9Q9BRR9 750 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 FANCEQ9HB96 536 aa18.59■□□□□ 0.57
CLN3-260ENST00000637578 PLAGL1Q9UM63 463 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms