RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 BTBD10Q9BSF8 475 aa16.41■□□□□ 0.22
CLN3-252ENST00000636907 SUFUQ9UMX1 484 aa16.41■□□□□ 0.22
CLN3-252ENST00000636907 PSMD13Q9UNM6 376 aa16.41■□□□□ 0.22
CLN3-252ENST00000636907 CYP8B1Q9UNU6 501 aa16.41■□□□□ 0.22
CLN3-252ENST00000636907 LOC100653049A0A140TA62 436 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 FAM170BA6NMN3 283 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 B2RBV5 119 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 H0Y8X5 98 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 FPGTO14772 594 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 VPS4BO75351 444 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 KRT34O76011 436 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 CLDN9O95484 217 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 KRT16P08779 473 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 HOXC4P09017 264 aaPredicted RBP16.4■□□□□ 0.22
CLN3-252ENST00000636907 PRR35P0CG20 571 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 COX4I1P13073 169 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 ACP5P13686 325 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 HNRNPA2B1P22626 353 aaKnown RBP16.4■□□□□ 0.22
CLN3-252ENST00000636907 ADSLP30566 484 aaPredicted RBP16.4■□□□□ 0.22
CLN3-252ENST00000636907 KIAA1024LP59773 190 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 DMPKQ09013 629 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 NAE1Q13564 534 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 IL27RAQ6UWB1 636 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 UNC5DQ6UXZ4 953 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 THOC6Q86W42 341 aaKnown RBP16.4■□□□□ 0.22
CLN3-252ENST00000636907 GALNT13Q8IUC8 556 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 KLHDC8AQ8IYD2 350 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 PPFIBP2Q8ND30 876 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 TSTD1Q8NFU3 115 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 BMFQ96LC9 184 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 UHRF1Q96T88 793 aaPredicted RBP16.4■□□□□ 0.22
CLN3-252ENST00000636907 TBC1D10AQ9BXI6 508 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 C6orf106Q9H6K1 298 aaPredicted RBP16.4■□□□□ 0.22
CLN3-252ENST00000636907 ACTR8Q9H981 624 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 EBF2Q9HAK2 575 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 INTS7Q9NVH2 962 aaKnown RBP16.4■□□□□ 0.22
CLN3-252ENST00000636907 TAS2R1Q9NYW7 299 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 MOSPD1Q9UJG1 213 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 PLEKHM1Q9Y4G2 1056 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 KLHL33A6NCF5 533 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 MEI4A8MW99 385 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 FFAR3O14843 346 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 GPR42O15529 346 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 LATO43561 262 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 LBPP18428 481 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 SQLEQ14534 574 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 ABRAXAS2Q15018 415 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 PYCR3Q53H96 274 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 MYLK4Q86YV6 388 aaPredicted RBP16.4■□□□□ 0.22
CLN3-252ENST00000636907 SIX5Q8N196 739 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 CHCHD4Q8N4Q1 142 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 OR9A1PQ8NGU1 263 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 OR56A3Q8NH54 315 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 ZNF480Q8WV37 535 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 UTP4Q969X6 686 aaKnown RBP16.4■□□□□ 0.22
CLN3-252ENST00000636907 MED8Q96G25 268 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 TOE1Q96GM8 510 aaKnown RBP16.4■□□□□ 0.22
CLN3-252ENST00000636907 SCARF2Q96GP6 870 aaPredicted RBP16.4■□□□□ 0.22
CLN3-252ENST00000636907 SHDQ96IW2 340 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 HBEGFQ99075 208 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 CCT7Q99832 543 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 TIMM29Q9BSF4 260 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 FGF22Q9HCT0 170 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 PFDN4Q9NQP4 134 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 ASF1AQ9Y294 204 aa16.4■□□□□ 0.22
CLN3-252ENST00000636907 GYG2O15488 501 aa16.39■□□□□ 0.21
CLN3-252ENST00000636907 PRAMEF4O60810 478 aa16.39■□□□□ 0.21
CLN3-252ENST00000636907 PEX11AO75192 247 aa16.39■□□□□ 0.21
CLN3-252ENST00000636907 RPL10P27635 214 aaKnown RBP16.39■□□□□ 0.21
CLN3-252ENST00000636907 GNPDA1P46926 289 aa16.39■□□□□ 0.21
CLN3-252ENST00000636907 TPRG1LQ5T0D9 272 aa16.39■□□□□ 0.21
CLN3-252ENST00000636907 PRAMEF9Q5VWM5 478 aa16.39■□□□□ 0.21
CLN3-252ENST00000636907 GCNT7Q6ZNI0 430 aa16.39■□□□□ 0.21
CLN3-252ENST00000636907 Q6ZSR9 355 aa16.39■□□□□ 0.21
CLN3-252ENST00000636907 RBM15BQ8NDT2 890 aaKnown RBP16.39■□□□□ 0.21
CLN3-252ENST00000636907 PHC3Q8NDX5 983 aa16.39■□□□□ 0.21
CLN3-252ENST00000636907 OR5AR1Q8NGP9 310 aa16.39■□□□□ 0.21
CLN3-252ENST00000636907 HMGCLL1Q8TB92 370 aa16.39■□□□□ 0.21
CLN3-252ENST00000636907 TFGQ92734 400 aaPredicted RBP16.39■□□□□ 0.21
CLN3-252ENST00000636907 CADM1Q9BY67 442 aaKnown RBP16.39■□□□□ 0.21
CLN3-252ENST00000636907 SLC40A1Q9NP59 571 aa16.39■□□□□ 0.21
CLN3-252ENST00000636907 RIC8BQ9NVN3 520 aa16.39■□□□□ 0.21
CLN3-252ENST00000636907 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.39■□□□□ 0.21
CLN3-252ENST00000636907 KLQ9UEF7 1012 aa16.39■□□□□ 0.21
CLN3-252ENST00000636907 ACSL5Q9ULC5 683 aa16.39■□□□□ 0.21
CLN3-252ENST00000636907 KCNK6Q9Y257 313 aa16.39■□□□□ 0.21
CLN3-252ENST00000636907 GPSM3Q9Y4H4 160 aa16.39■□□□□ 0.21
CLN3-252ENST00000636907 KCNE1BA0A087WTH5 132 aa16.38■□□□□ 0.21
CLN3-252ENST00000636907 IGHV4-34P06331 123 aa16.38■□□□□ 0.21
CLN3-252ENST00000636907 AKT2P31751 481 aa16.38■□□□□ 0.21
CLN3-252ENST00000636907 ATP4BP51164 291 aa16.38■□□□□ 0.21
CLN3-252ENST00000636907 NFATC4Q14934 902 aa16.38■□□□□ 0.21
CLN3-252ENST00000636907 HERC3Q15034 1050 aa16.38■□□□□ 0.21
CLN3-252ENST00000636907 GGTA1PQ4G0N0 100 aa16.38■□□□□ 0.21
CLN3-252ENST00000636907 LONP2Q86WA8 852 aa16.38■□□□□ 0.21
CLN3-252ENST00000636907 SNX32Q86XE0 403 aa16.38■□□□□ 0.21
CLN3-252ENST00000636907 SFRP1Q8N474 314 aa16.38■□□□□ 0.21
CLN3-252ENST00000636907 L3MBTL4Q8NA19 623 aa16.38■□□□□ 0.21
CLN3-252ENST00000636907 OR4K3Q96R72 315 aa16.38■□□□□ 0.21
CLN3-252ENST00000636907 SLC29A3Q9BZD2 475 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms