RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 IGSF21Q96ID5 467 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 ACPTQ9BZG2 426 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 GPN2Q9H9Y4 310 aaPredicted RBP12.48□□□□□ -0.41
LINC00540-203ENST00000631321 PCDHB14Q9Y5E9 798 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 PCDHGA8Q9Y5G5 932 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 HTTP42858 3142 aa12.48□□□□□ -0.41
LINC00540-203ENST00000631321 CLDN9O95484 217 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 OLFM2O95897 454 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 CCNA2P20248 432 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 CD247P20963 164 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 PIGAP37287 484 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 DCTP40126 519 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 SP3Q02447 781 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 TOP3AQ13472 1001 aaPredicted RBP12.47□□□□□ -0.41
LINC00540-203ENST00000631321 VEPH1Q14D04 833 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 SGO1Q5FBB7 561 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 ZC3H12BQ5HYM0 836 aaKnown RBP12.47□□□□□ -0.41
LINC00540-203ENST00000631321 SPARTQ8N0X7 666 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 RAB2BQ8WUD1 216 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 HHIPQ96QV1 700 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 SLC22A12Q96S37 553 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 SLC32A1Q9H598 525 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 SLC6A13Q9NSD5 602 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 UTS2RQ9UKP6 389 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 NAALAD2Q9Y3Q0 740 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 KCNE1BA0A087WTH5 132 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 PITPNM1O00562 1244 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 ZNF821O75541 412 aaPredicted RBP12.47□□□□□ -0.41
LINC00540-203ENST00000631321 ANXA5P08758 320 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 PRPS2P11908 318 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 ACPPP15309 386 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 PTPN6P29350 595 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 NSG1P42857 185 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 RAB15P59190 212 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 RPS14P62263 151 aaKnown RBP12.47□□□□□ -0.41
LINC00540-203ENST00000631321 KCNAB2Q13303 367 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 MOGQ16653 247 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 LAIR2Q6ISS4 152 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 DNAJB7Q7Z6W7 309 aaPredicted RBP12.47□□□□□ -0.41
LINC00540-203ENST00000631321 METTL3Q86U44 580 aaKnown RBP12.47□□□□□ -0.41
LINC00540-203ENST00000631321 CHPFQ8IZ52 775 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 ADGRG2Q8IZP9 1017 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 FAM9CQ8IZT9 166 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 FBLIM1Q8WUP2 373 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 TBC1D20Q96BZ9 403 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 TBCDQ9BTW9 1192 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 ATP13A3Q9H7F0 1226 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 FAIMQ9NVQ4 179 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 ZDHHC3Q9NYG2 299 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 BLOC1S6Q9UL45 172 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 PDE10AQ9Y233 779 aa12.47□□□□□ -0.41
LINC00540-203ENST00000631321 ZNF106Q9H2Y7 1883 aaKnown RBP12.46□□□□□ -0.41
LINC00540-203ENST00000631321 WNT9AO14904 365 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 SLC16A6O15403 523 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 HTR1AP08908 422 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 IL7RP16871 459 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 MAGEA2P43356 314 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 ZXDBP98169 803 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 TMED1Q13445 227 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 IL18R1Q13478 541 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 LAPTM5Q13571 262 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 BOP1Q14137 746 aaKnown RBP12.46□□□□□ -0.41
LINC00540-203ENST00000631321 GBX1Q14549 363 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 CTU2Q2VPK5 515 aaKnown RBP12.46□□□□□ -0.41
LINC00540-203ENST00000631321 RFX4Q33E94 735 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 KIAA1841Q6NSI8 718 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 DNAJC14Q6Y2X3 702 aaPredicted RBP12.46□□□□□ -0.41
LINC00540-203ENST00000631321 MBOAT1Q6ZNC8 495 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 GCNT7Q6ZNI0 430 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 MSANTD1Q6ZTZ1 278 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 LRRC70Q7Z2Q7 622 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 ZSWIM9Q86XI8 627 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 PHACTR4Q8IZ21 702 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 HS3ST5Q8IZT8 346 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 EID3Q8N140 333 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 RNF217Q8TC41 542 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 VOPP1Q96AW1 172 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 TESCQ96BS2 214 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 ITCHQ96J02 903 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 LHPPQ9H008 270 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 C3orf18Q9UK00 162 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 DLGAP4Q9Y2H0 992 aa12.46□□□□□ -0.41
LINC00540-203ENST00000631321 SCN8AQ9UQD0 1980 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 SERTM1A2A2V5 107 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 GNGT2O14610 69 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 SCAMP3O14828 347 aaKnown RBP12.46□□□□□ -0.42
LINC00540-203ENST00000631321 DNAJB5O75953 348 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 RECQL5O94762 991 aaPredicted RBP12.46□□□□□ -0.42
LINC00540-203ENST00000631321 PDYNP01213 254 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 GKP32189 559 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 S100A3P33764 101 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 ISL1P61371 349 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 CD47Q08722 323 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 ARHGEF7Q14155 803 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 ZNF691Q5VV52 312 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 SPESP1Q6UW49 350 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 TMEM179BQ7Z7N9 219 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 RBM23Q86U06 439 aaKnown RBP12.46□□□□□ -0.42
LINC00540-203ENST00000631321 HIPK1Q86Z02 1210 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 TCAIMQ8N3R3 496 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms