RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 AGO1Q9UL18 857 aaKnown RBP8.75□□□□□ -1.01
VCL-206ENST00000623461 TNS2Q63HR2 1409 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 IL32P24001 234 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 EPHB3P54753 998 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 SNRPD1P62314 119 aaKnown RBP8.74□□□□□ -1.01
VCL-206ENST00000623461 S100A12P80511 92 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 UGCGQ16739 394 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 PDE12Q6L8Q7 609 aaKnown RBP8.74□□□□□ -1.01
VCL-206ENST00000623461 ITIH5Q86UX2 942 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 PIWIL1Q96J94 861 aaKnown RBP8.74□□□□□ -1.01
VCL-206ENST00000623461 POLR2J3Q9H1A7 115 aaKnown RBP8.74□□□□□ -1.01
VCL-206ENST00000623461 RNF181Q9P0P0 153 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 SLC9A3R1O14745 358 aaPredicted RBP8.74□□□□□ -1.01
VCL-206ENST00000623461 GSTM3P21266 225 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 PSMA6P60900 246 aaKnown RBP8.74□□□□□ -1.01
VCL-206ENST00000623461 FAM182BQ5T319 152 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 LHFPL3Q86UP9 236 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 UBQLNLQ8IYU4 475 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 DAW1Q8N136 415 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 GEMIN6Q8WXD5 167 aaKnown RBP8.74□□□□□ -1.01
VCL-206ENST00000623461 DEDD2Q8WXF8 326 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 ING5Q8WYH8 240 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 FCRL2Q96LA5 508 aaPredicted RBP8.74□□□□□ -1.01
VCL-206ENST00000623461 LMAN2LQ9H0V9 348 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 TCEA1P23193 301 aaKnown RBP8.74□□□□□ -1.01
VCL-206ENST00000623461 PTGR1Q14914 329 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 SETMARQ53H47 684 aaPredicted RBP8.74□□□□□ -1.01
VCL-206ENST00000623461 QSOX2Q6ZRP7 698 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 CPNE8Q86YQ8 564 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 CFAP206Q8IYR0 622 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 ZNF615Q8N8J6 731 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 SETD6Q8TBK2 473 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 COPS8Q99627 209 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 SLC39A3Q9BRY0 314 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 ASPNQ9BXN1 380 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 ABCG8Q9H221 673 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 SMOXQ9NWM0 555 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 EIF2B4Q9UI10 523 aaKnown RBP8.74□□□□□ -1.01
VCL-206ENST00000623461 MOXD2PA6NHM9 499 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 SNNO75324 88 aaPredicted RBP8.74□□□□□ -1.01
VCL-206ENST00000623461 ANXA4P09525 319 aaPredicted RBP8.74□□□□□ -1.01
VCL-206ENST00000623461 ITGB5P18084 799 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 RAB5BP61020 215 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 ZNF548Q8NEK5 533 aaPredicted RBP8.74□□□□□ -1.01
VCL-206ENST00000623461 SMG7Q92540 1137 aaKnown RBP8.74□□□□□ -1.01
VCL-206ENST00000623461 TIGARQ9NQ88 270 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 PCDHGB7Q9Y5F8 929 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 ZNF780BQ9Y6R6 833 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 FXYD6-FXYD2A0A087WZ82 144 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 CST3P01034 146 aaPredicted RBP8.74□□□□□ -1.01
VCL-206ENST00000623461 RLN2P04090 185 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 EPCAMP16422 314 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 CD247P20963 164 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 PRPS1L1P21108 318 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 C2orf80Q0P641 193 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 ABHD18Q0P651 414 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 CLCA4Q14CN2 919 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 COMMD7Q86VX2 200 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 DCP2Q8IU60 420 aaKnown RBP8.74□□□□□ -1.01
VCL-206ENST00000623461 TIGD4Q8IY51 512 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 OXR1Q8N573 874 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 OR7G1Q8NGA0 311 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 WACQ9BTA9 647 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 FXYD6Q9H0Q3 95 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 THUMPD1Q9NXG2 353 aaKnown RBP8.74□□□□□ -1.01
VCL-206ENST00000623461 CDC14AQ9UNH5 594 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 PPP2R3BQ9Y5P8 575 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 SPATA31C2B4DYI2 1134 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 PAGE1O75459 146 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 GOT2P00505 430 aaKnown RBP8.74□□□□□ -1.01
VCL-206ENST00000623461 SRPRAP08240 638 aaKnown RBP8.74□□□□□ -1.01
VCL-206ENST00000623461 POU2F1P14859 743 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 SCNN1AP37088 669 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 HSPA7P48741 367 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 RHEBQ15382 184 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 TCEA2Q15560 299 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 MINDY1Q8N5J2 469 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 SPERTQ8NA61 448 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 SACM1LQ9NTJ5 587 aa8.74□□□□□ -1.01
VCL-206ENST00000623461 ESR1P03372 595 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 HMGN1P05114 100 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 ATP5C1P36542 298 aaKnown RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 KLF1Q13351 362 aaPredicted RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 PRAMEF17Q5VTA0 474 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 C1orf189Q5VU69 101 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 PPP2R2DQ66LE6 453 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 SMYD5Q6GMV2 418 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 ZC3HC1Q86WB0 502 aaKnown RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 OR8J3Q8NGG0 315 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 TIFAQ96CG3 184 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 FCRL5Q96RD9 977 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 CCDC3Q9BQI4 270 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 AIFM2Q9BRQ8 373 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 TRIM2Q9C040 744 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 MKRN2Q9H000 416 aaKnown RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 MAP4K5Q9Y4K4 846 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 DUOX1Q9NRD9 1551 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 TEX51A0A1B0GUA7 166 aa8.73□□□□□ -1.01
VCL-206ENST00000623461 BHMG1C9JSJ3 638 aaPredicted RBP8.73□□□□□ -1.01
VCL-206ENST00000623461 SOCS2O14508 198 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms