RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 GRIK2Q13002 908 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 INPP5AQ14642 412 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 PRSS36Q5K4E3 855 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 GLYATQ6IB77 296 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 LCN8Q6JVE9 175 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 BRAT1Q6PJG6 821 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 ERMP1Q7Z2K6 904 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 EPHX4Q8IUS5 362 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 AHI1Q8N157 1196 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 OR10Q1Q8NGQ4 319 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 OR10A6Q8NH74 314 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 BIRC7Q96CA5 298 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 MED8Q96G25 268 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 RNF145Q96MT1 663 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 CGREF1Q99674 301 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 CCT7Q99832 543 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 NTMT1Q9BV86 223 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 EBPLQ9BY08 206 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 Q9H521 79 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 ELOVL6Q9H5J4 265 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 IL36AQ9UHA7 158 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 EIF3LQ9Y262 564 aaKnown RBP10.36□□□□□ -0.75
CUX1-221ENST00000622516 IGLV3-16A0A075B6K0 115 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 RNF103-CHMP3A0A140T963 221 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 AREL1O15033 823 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 TULP3O75386 442 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 SEC24DO94855 1032 aaPredicted RBP10.36□□□□□ -0.75
CUX1-221ENST00000622516 CYP17A1P05093 508 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 BCKDHAP12694 445 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 EFNA1P20827 205 aaPredicted RBP10.36□□□□□ -0.75
CUX1-221ENST00000622516 NFKBIAP25963 317 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 VIPR1P32241 457 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 PHC1P78364 1004 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 LIN52Q52LA3 116 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 THEMIS2Q5TEJ8 643 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 C10orf111Q8N326 155 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 DTWD1Q8N5C7 304 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 RASGEF1AQ8N9B8 481 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 CDC26Q8NHZ8 85 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 SLC13A3Q8WWT9 602 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 FIG4Q92562 907 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 ZUFSPQ96AP4 578 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 APIPQ96GX9 242 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 MTERF1Q99551 399 aaKnown RBP10.36□□□□□ -0.75
CUX1-221ENST00000622516 TSC22D3Q99576 134 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 SLC12A9Q9BXP2 914 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 HPS4Q9NQG7 708 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 TBC1D14Q9P2M4 693 aa10.36□□□□□ -0.75
CUX1-221ENST00000622516 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.36□□□□□ -0.75
CUX1-221ENST00000622516 HELZP42694 1942 aaKnown RBP10.36□□□□□ -0.75
CUX1-221ENST00000622516 CAPNS1P04632 268 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 PGRP06401 933 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 ELFN1P0C7U0 828 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 SMIM18P0DKX4 95 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 PPP1R8Q12972 351 aaKnown RBP10.35□□□□□ -0.75
CUX1-221ENST00000622516 BNIP2Q12982 314 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 GRM2Q14416 872 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 KIAA0040Q15053 153 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 MAPKAPK3Q16644 382 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 COQ5Q5HYK3 327 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 PARS2Q7L3T8 475 aaKnown RBP10.35□□□□□ -0.75
CUX1-221ENST00000622516 TMEM126BQ8IUX1 230 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 FAM86B1Q8N7N1 296 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 ZNF707Q96C28 371 aaPredicted RBP10.35□□□□□ -0.75
CUX1-221ENST00000622516 AP2M1Q96CW1 435 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 APOLD1Q96LR9 279 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 GRIP2Q9C0E4 1043 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 RDH14Q9HBH5 336 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 ARMC1Q9NVT9 282 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 NEUROG3Q9Y4Z2 214 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 MAGED1Q9Y5V3 778 aaPredicted RBP10.35□□□□□ -0.75
CUX1-221ENST00000622516 TCF20Q9UGU0 1960 aaKnown RBP10.35□□□□□ -0.75
CUX1-221ENST00000622516 DOCK9Q9BZ29 2069 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 ZNF106Q9H2Y7 1883 aaKnown RBP10.35□□□□□ -0.75
CUX1-221ENST00000622516 F5P12259 2224 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 TCRBV5S2A0A599 114 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 PABPN1LA6NDY0 278 aaKnown RBP10.35□□□□□ -0.75
CUX1-221ENST00000622516 AQP12BA6NM10 295 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 XYLBO75191 536 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 FASP25445 335 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 BDKRB1P46663 353 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 CHIT1Q13231 466 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 PGS1Q32NB8 556 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 EEF1AKMT2Q5JPI9 291 aaKnown RBP10.35□□□□□ -0.75
CUX1-221ENST00000622516 AQP12AQ8IXF9 295 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 RAVER1Q8IY67 606 aaKnown RBP10.35□□□□□ -0.75
CUX1-221ENST00000622516 TSPEARQ8WU66 669 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 GTF2H4Q92759 462 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 ZNF597Q96LX8 424 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 OR52E6Q96RD3 313 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 AGPAT4Q9NRZ5 378 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 C1orf109Q9NX04 203 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 SLC25A37Q9NYZ2 338 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 UTS2RQ9UKP6 389 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 IFRD1O00458 451 aaPredicted RBP10.35□□□□□ -0.75
CUX1-221ENST00000622516 ENO2P09104 434 aaPredicted RBP10.35□□□□□ -0.75
CUX1-221ENST00000622516 FAM58BPP0C7Q3 252 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 CYP2A6P11509 494 aaPredicted RBP10.35□□□□□ -0.75
CUX1-221ENST00000622516 ADH5P11766 374 aa10.35□□□□□ -0.75
CUX1-221ENST00000622516 JAK1P23458 1154 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms