RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 ATG13O75143 517 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 DNAJC8O75937 253 aaPredicted RBP10.27□□□□□ -0.77
VPS11-208ENST00000621676 RSL1D1O76021 490 aaKnown RBP10.27□□□□□ -0.77
VPS11-208ENST00000621676 COL6A2P12110 1019 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 FOSL2P15408 326 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 TYRP1P17643 537 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 ITGAXP20702 1163 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 GRSF1Q12849 480 aaKnown RBP eCLIP10.27□□□□□ -0.77
VPS11-208ENST00000621676 ZRSR2Q15696 482 aaKnown RBP10.27□□□□□ -0.77
VPS11-208ENST00000621676 ATP6AP1LQ52LC2 224 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 PRAMEF9Q5VWM5 478 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 ADAMTSL2Q86TH1 951 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 SFRP1Q8N474 314 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 DEFB123Q8N688 67 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 OR4E2Q8NGC2 313 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 PDXPQ96GD0 296 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 TMEM79Q9BSE2 394 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 WDR41Q9HAD4 459 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 ARHGEF3Q9NR81 526 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 KCTD5Q9NXV2 234 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 SH3BP4Q9P0V3 963 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 MRASO14807 208 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 PEX1O43933 1283 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 CIB2O75838 187 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 TGDSO95455 350 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 NTSR1P30989 418 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 RNF144AP50876 292 aaPredicted RBP10.27□□□□□ -0.77
VPS11-208ENST00000621676 PLA2G16P53816 162 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 NFKB2Q00653 900 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 MS4A2Q01362 244 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 IRF4Q15306 451 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 PCBP2Q15366 365 aaKnown RBP eCLIP10.27□□□□□ -0.77
VPS11-208ENST00000621676 AMIGO2Q86SJ2 522 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 TMEFF1Q8IYR6 380 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 ICA1LQ8NDH6 482 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 FAM3CQ92520 227 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 TFGQ92734 400 aaPredicted RBP10.27□□□□□ -0.77
VPS11-208ENST00000621676 RHBDF1Q96CC6 855 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 OTUB2Q96DC9 234 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 PPP1R16AQ96I34 528 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 CPEB1Q9BZB8 566 aaKnown RBP10.27□□□□□ -0.77
VPS11-208ENST00000621676 S1PR5Q9H228 398 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 DPEP2Q9H4A9 486 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 TAC3Q9UHF0 121 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 ZFR2Q9UPR6 939 aaKnown RBP10.27□□□□□ -0.77
VPS11-208ENST00000621676 VPS9D1Q9Y2B5 631 aa10.27□□□□□ -0.77
VPS11-208ENST00000621676 ANGPT2O15123 496 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 NVLO15381 856 aaKnown RBP10.26□□□□□ -0.77
VPS11-208ENST00000621676 HOXC11O43248 304 aaPredicted RBP10.26□□□□□ -0.77
VPS11-208ENST00000621676 NDUFV2P19404 249 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 ACTR1BP42025 376 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 ACTR1AP61163 376 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 ATP6V0D1P61421 351 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 CYP4F3Q08477 520 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 PLCL1Q15111 1095 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 GRAMD1BQ3KR37 738 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 CYP27C1Q4G0S4 372 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 HENMT1Q5T8I9 393 aaKnown RBP10.26□□□□□ -0.77
VPS11-208ENST00000621676 AGTRAPQ6RW13 159 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 Q6ZSR9 355 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 NUDT18Q6ZVK8 323 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 AFAP1L2Q8N4X5 818 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 CMTM5Q96DZ9 223 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 DTD2Q96FN9 168 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 THUMPD3Q9BV44 507 aaKnown RBP10.26□□□□□ -0.77
VPS11-208ENST00000621676 WDR26Q9H7D7 661 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 RNGTTO60942 597 aaKnown RBP10.26□□□□□ -0.77
VPS11-208ENST00000621676 EML2O95834 649 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 PDYNP01213 254 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 CELA2BP08218 269 aaPredicted RBP10.26□□□□□ -0.77
VPS11-208ENST00000621676 HK2P52789 917 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 KCNC3Q14003 757 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 ADGRG6Q86SQ4 1221 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 TRIM73Q86UV7 250 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 RETREG3Q86VR2 466 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 TMEM145Q8NBT3 493 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 FOPNLQ96NB1 174 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 PKP4Q99569 1192 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 TMEM168Q9H0V1 697 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 SPNS1Q9H2V7 528 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 C6orf106Q9H6K1 298 aaPredicted RBP10.26□□□□□ -0.77
VPS11-208ENST00000621676 FADS3Q9Y5Q0 445 aa10.26□□□□□ -0.77
VPS11-208ENST00000621676 ATXN2Q99700 1313 aaKnown RBP10.25□□□□□ -0.77
VPS11-208ENST00000621676 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.25□□□□□ -0.77
VPS11-208ENST00000621676 CAPN14A8MX76 684 aa10.25□□□□□ -0.77
VPS11-208ENST00000621676 ANP32DO95626 131 aa10.25□□□□□ -0.77
VPS11-208ENST00000621676 CAPN3P20807 821 aa10.25□□□□□ -0.77
VPS11-208ENST00000621676 AOAHP28039 575 aa10.25□□□□□ -0.77
VPS11-208ENST00000621676 SRSF5Q13243 272 aaKnown RBP10.25□□□□□ -0.77
VPS11-208ENST00000621676 NFYCQ13952 458 aa10.25□□□□□ -0.77
VPS11-208ENST00000621676 PTK2BQ14289 1009 aa10.25□□□□□ -0.77
VPS11-208ENST00000621676 FAM174BQ3ZCQ3 159 aa10.25□□□□□ -0.77
VPS11-208ENST00000621676 LACTB2Q53H82 288 aaPredicted RBP10.25□□□□□ -0.77
VPS11-208ENST00000621676 PAGE3Q5JUK9 113 aa10.25□□□□□ -0.77
VPS11-208ENST00000621676 SNAP47Q5SQN1 464 aa10.25□□□□□ -0.77
VPS11-208ENST00000621676 PIP5KL1Q5T9C9 394 aa10.25□□□□□ -0.77
VPS11-208ENST00000621676 DSG4Q86SJ6 1040 aa10.25□□□□□ -0.77
VPS11-208ENST00000621676 AMZ2Q86W34 360 aa10.25□□□□□ -0.77
VPS11-208ENST00000621676 SIX5Q8N196 739 aa10.25□□□□□ -0.77
VPS11-208ENST00000621676 HMGCLL1Q8TB92 370 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 512.9 ms