RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 OR1J4Q8NGS1 313 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 OR13F1Q8NGS4 319 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 LRRC46Q96FV0 321 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 SEPT5Q99719 369 aaPredicted RBP4.87□□□□□ -1.63
VPS13D-213ENST00000613099 DPY30Q9C005 99 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 ZDHHC5Q9C0B5 715 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 ARL6Q9H0F7 186 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 OR51E2Q9H255 320 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 IL1RAPQ9NPH3 570 aa4.87□□□□□ -1.63
VPS13D-213ENST00000613099 NIPSNAP2O75323 286 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 HIBADHP31937 336 aaKnown RBP4.86□□□□□ -1.63
VPS13D-213ENST00000613099 GCNT7Q6ZNI0 430 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 CNOT9Q92600 299 aaKnown RBP4.86□□□□□ -1.63
VPS13D-213ENST00000613099 NARFLQ9H6Q4 476 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 ZNF408Q9H9D4 720 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 DDX39AO00148 427 aaKnown RBP4.86□□□□□ -1.63
VPS13D-213ENST00000613099 CA12O43570 354 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 LYPLA1O75608 230 aaPredicted RBP4.86□□□□□ -1.63
VPS13D-213ENST00000613099 F10P00742 488 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 PRH1P02810 166 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 RAF1P04049 648 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 CALCRP30988 508 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 CERCAMQ5T4B2 595 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 ZNF852Q6ZMS4 543 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 VAT1Q99536 393 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 MGME1Q9BQP7 344 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 MIR1-1HGQ9H1L0 117 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 TMPRSS5Q9H3S3 457 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 NAALAD2Q9Y3Q0 740 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 KCNU1A8MYU2 1149 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 hCG_2039718K7EN88 272 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 PLIN3O60664 434 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 SNRNP35Q16560 246 aaKnown RBP4.86□□□□□ -1.63
VPS13D-213ENST00000613099 PPP1R26Q5T8A7 1209 aaPredicted RBP4.86□□□□□ -1.63
VPS13D-213ENST00000613099 HACD2Q6Y1H2 254 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 SIAH1Q8IUQ4 282 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 CPSF7Q8N684 471 aaKnown RBP4.86□□□□□ -1.63
VPS13D-213ENST00000613099 OR2T35Q8NGX2 323 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 DNAJB8Q8NHS0 232 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 MARVELD3Q96A59 401 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 BEX2Q9BXY8 128 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 TGIF2Q9GZN2 237 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 IL22Q9GZX6 179 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 ALG2Q9H553 416 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 ITM2CQ9NQX7 267 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 SIRPGQ9P1W8 387 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 MEN1O00255 615 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 TFP02787 698 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 H2AFB2P0C5Z0 115 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 CDO1Q16878 200 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 FAM71AQ8IYT1 594 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 PHACTR4Q8IZ21 702 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 ST7LQ8TDW4 575 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 CANT1Q8WVQ1 401 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 QRFPRQ96P65 431 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 TOLLIPQ9H0E2 274 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 ZBTB26Q9HCK0 441 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 NR2E1Q9Y466 385 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 PCDHGA8Q9Y5G5 932 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 CCDC85CA6NKD9 419 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 OR7A17O14581 309 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 ARPC2O15144 300 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 PLSCR1O15162 318 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 HNF1AP20823 631 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 GALK2Q01415 458 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 VPS26BQ4G0F5 336 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 SLC35F1Q5T1Q4 408 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 MAP1SQ66K74 1059 aaPredicted RBP4.86□□□□□ -1.63
VPS13D-213ENST00000613099 FAM117BQ6P1L5 589 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 ING5Q8WYH8 240 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 ITCHQ96J02 903 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 FNIP2Q9P278 1114 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 ABCA3Q99758 1704 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 SLC35F4A4IF30 521 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 AGAP14A8MT82 685 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 CYTIPO60759 359 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 MMP20O60882 483 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 TSPAN8P19075 237 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 PSMA6P60900 246 aaKnown RBP4.86□□□□□ -1.63
VPS13D-213ENST00000613099 MTM1Q13496 603 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 NR6A1Q15406 480 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 ARL13AQ5H913 290 aaPredicted RBP4.86□□□□□ -1.63
VPS13D-213ENST00000613099 HACD4Q5VWC8 232 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 TFAP2DQ7Z6R9 452 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 C12orf29Q8N999 325 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 KIAA0895Q8NCT3 520 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 PAPOLGQ9BWT3 736 aaKnown RBP4.86□□□□□ -1.63
VPS13D-213ENST00000613099 B3GNT5Q9BYG0 378 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 PCDHB3Q9Y5E6 796 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 SDC3O75056 442 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 ZBTB48P10074 688 aaPredicted RBP4.86□□□□□ -1.63
VPS13D-213ENST00000613099 UGT2B10P36537 528 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 ARF3P61204 181 aaPredicted RBP4.86□□□□□ -1.63
VPS13D-213ENST00000613099 ARF1P84077 181 aaKnown RBP4.86□□□□□ -1.63
VPS13D-213ENST00000613099 PICALMQ13492 652 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 ZYXQ15942 572 aaKnown RBP4.86□□□□□ -1.63
VPS13D-213ENST00000613099 NANOGP8Q6NSW7 305 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 MFSD7Q6UXD7 560 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 TMC2Q8TDI7 906 aa4.86□□□□□ -1.63
VPS13D-213ENST00000613099 ZNF641Q96N77 438 aaPredicted RBP4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms